Gene Information

Name : yscK (YP_pCD23)
Accession : NP_995351.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : putative type III secretion protein YscK
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 17025 - 17675 bp
Length : 651 bp
Strand : -
Note : Best Blastp hit =gi|16082748|ref|NP_395194.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|401693|sp|Q00927|yscK_YERPE Yop prot eins translocation protein K (Low calcium response locus protein KB), gi|11282516|pir||T43565 type III

DNA sequence : 
TTGGTTACAACGCAAGAAGTGATGATGGAAAATTATATTACCTCTTTTCAATTGCGCTTCTGCCCCGCGGCTTATTTGCA
CTTGGAACAGTTACCATCATTATGGCGTTCAATATTGCCCTACTTACCTCAGTGGCGCGATAGTGCTCATCTCAATGCTG
CTTTATTGGATGAATTTTCTCTTGATACCGACTATGAAGAGCCCCATGGGCTGGGGGCGCTGCCTTTGCAGCCTCAATCA
CAGCTCGAACTGTTACTTTGTCGCCTTGGATTAGTTCTGCATGGGGAGGCGATTCGCCGTTGTGTACTGGCCTCCCCATT
ACAACAATTATTGACATTGGTTAATCAAGAAACATTAAGGCAAATTATTGTACAGCATGAGCTGCTAATCGGGCCTTGGC
CCACTCACTGGCAGCGCCCGCTGCCGACAGAAATAGAGAGCCGTACCATGATCCAGTCGGGGCTGGCTTTTTGGTTAGCA
GCAATGGAACCCCAACCTCAGGCATGGTGTAAACGGCTCAGTTTACGCCTCCCATTAGCTACGCCGTCAGAACCTTGGTT
AGTGGCCGAGTCACAACGCCCACTGGCCCAAACTTTATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATT
TGTTCAAATAA

Protein sequence : 
MVTTQEVMMENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQS
QLELLLCRLGLVLHGEAIRRCVLASPLQQLLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAFWLA
AMEPQPQAWCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVTPTCSHLFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscK AAO18026.1 LscK Virulence TTSS locus Protein 5e-40 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscK NP_995351.1 putative type III secretion protein YscK VFG0410 Protein 2e-83 100
yscK NP_995351.1 putative type III secretion protein YscK VFG0219 Protein 2e-23 41