Gene Information

Name : yscL (YP_pCD22)
Accession : NP_995350.1
Strain :
Genome accession: NC_005813
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1317
EC number : -
Position : 16414 - 17079 bp
Length : 666 bp
Strand : -
Note : Best Blastp hit =gi|16082749|ref|NP_395195.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|401694|sp|Q00928|yscL_YERPE Yop proteins translocation protein L (Low calcium response locus protein KC), gi|11354332|pir||T43564 type III

DNA sequence : 
ATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATTTGTTCAAATAATACCAAGTAATCTCTCGCTCGCTTG
CGGTCTGCGTATTTTGCGCGCCGAAGATTACCAATCCAGTTTAACAACCGAAGAGTTGATTAGTGCCGCAAAACAAGATG
CTGAAAAGATCCTGGCTGACGCCCAAGAGGTTTATGAGCAACAAAAGCAGTTAGGATGGCAGGCTGGCATGGATGAGGCG
CGTACCTTACAGGCGACTTTGATTCATGAAACACAGTTACAATGTCAGCAATTTTATCGCCACGTCGAACAACAGATGAG
TGAAGTTGTACTTTTGGCGGTACGTAAAATCCTCAATGACTATGATCAAGTGGCTATGACACTGCAAGTTGTGCGGGAGG
CTTTAGCCTTGGTGAGTAATCAGAAGCAAGTCGTGGTCAGGGTCAACCCTGATCAGGCAGGAGCTATTCGTGAACAAATA
GCTAAAGTACATAAAGACTTCCCGGAAATAAGCTATTTAGAGGTGACTGCCGATGCGCGTTTGGATCAAGGGGGCTGTAT
ATTAGAGACTGAGGTAGGTATTATTGACGCGAGTATTGATGGGCAAATTGAAGCACTTTCTCGGGCAATATCTACCACTT
TAGGACAAATGAAAGTTACAGAATAG

Protein sequence : 
MSQTCQTGYAYMQPFVQIIPSNLSLACGLRILRAEDYQSSLTTEELISAAKQDAEKILADAQEVYEQQKQLGWQAGMDEA
RTLQATLIHETQLQCQQFYRHVEQQMSEVVLLAVRKILNDYDQVAMTLQVVREALALVSNQKQVVVRVNPDQAGAIREQI
AKVHKDFPEISYLEVTADARLDQGGCILETEVGIIDASIDGQIEALSRAISTTLGQMKVTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18079.1 LscL Not tested TTSS locus Protein 1e-65 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscL NP_995350.1 type III secretion system protein VFG0411 Protein 7e-100 100
yscL NP_995350.1 type III secretion system protein VFG0220 Protein 3e-57 57