Gene Information

Name : fimD7 (YP_3405)
Accession : NP_994689.1
Strain : Yersinia pestis 91001
Genome accession: NC_005810
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3818215 - 3820044 bp
Length : 1830 bp
Strand : -
Note : highly similar to Yersinia pestis KIM y4062. Contains Fimbrial biogenesis outer membrane usher protein (Interpro|IPR000015, (GO:0016020))

DNA sequence : 
ATGCCATATAATTCTAAAAGAAAAAAAACCATCTTCCTAATGGTGAAAGTATTAACAATAATTTTAGTATGGTTATTTTT
GCCTGAATCGACTGCAGTAGTAAAATTCAATACCAATATTATCGATGCTAAAGACCGTAGTAATATCGATCTCTCTCGTT
TTGAGGTTGATGATTACACCCCTCCGGGGAATTATCTACTTGATATTCTTATTGATGATAGGCTGTTACCTGAACGTTAT
TTAGTGACTTATCTCGCTGTTGATGAAGGGAAATCAACGAAGCTCTGTTTGACGCCTGACTTAGTTAATCTATTTGGTTT
ATCTACGGAAGTACGTGAGTCGATGACATTATGGAATAACGACAAGTGTGTTGCTATTGATGAAAAAAAAGAGATAAAAA
TTCAGTACGATAAAGAGAAGCAATCCTTAATTATTTCTATTCCCCAAGCTTGGCTGGCTTATAACGATCCCAATTGGGTG
CCGCCTTCACAATGGGGAAACGGTGTTGCTGGTACTTTATTGGATTACAATTTGTTTGGTTATCATTATTCACCGAATAT
GGGCGGCAGTACCACAAATTTCAGCAGCTACGGCACTACCGGGGCTAATATGGGACCATGGCGTATTCGTGCAGATTACC
AATATATCAATACAGAAACGGCGGGCGAGCACTACCGTAATTTTGATTGGTCGCAAGTGTATGCTTTTCGAGCCATCCCC
TCGATAGGGGCTAAATTTGTCGGTGGCCAGACTTATCTCAACTCCAGTATTTTTGATTCATTCCGTTTTCTGGGCACTTC
ACTTTCCAGTGATGAGCGCATGTTGCCACCGACGTTACGCGGCTATGCACCACAGGTAATGGGCATTGCTCACACCAACG
CCCGCGTGGTATTGAGCCAGAATGGGCGGGTGCTTTATCAGACTAACGTTGCACCAGGCCCCTTTGTTATTCAAGACATT
AGCGAAGCCGTACAAGGGAATATTGATGTCCGCGTGGAAGAGGAAGATGGCCGGGTCACCGTGTTTCAAGTCAACGCCGC
GAGCGTGCCATTTTTAACCCGTAAAGGTGCCGTGCGCTATAAAGCTGCGTTGGGTCGCCCGATGCTGGGTAATTCAGCCA
GTAATCCGACATTCTTTAGTGGCGAATTCTCGTGGGGCGCATTTAACCATGTTTCATTATACGGTGGGCTGATGACGACT
TCGCAGGATTACACCTCGGCTGCGTTGGGCATCGGGCAAAATTTATATGACTTCGGCGCACTGTCTATTGATATCACCCA
TTCCCGTGCGCAGTTACCAAATGAAGAACAGCAGAACGGGGAAAGCTATCGCGTTAATTATTCCAAACGTTTTGAGCAGA
CTGACAGCCAGATTAGCTTTGCCGGATACCGTTTCTCGAAGAAGAATTTTATGAGTATGAGCCAGTATTTGGATTGGCTA
AACGGCAATACTGCTCTGCAATATGACAAGCAGGCTTATACCGTGGCAGCTAACCAGTATCTGGCCTGGCCGGATATCAC
GATGTATTTATCGGTGACACGTAGAACCTATTGGAATGCGGCCTCCAGTAACAACTACAGTCTATCCATGAGCAAGATTT
TTGATATCGGTACTTTTAAGGGTATTTCGGCGACGATATCCGCTAATAAGGTGAATAATCAGTATGCCAATGAGAATCAA
ATGTTCTTCTCACTCAGCGTACCGATCGGCATAGGCCAGCAGGCCAGCTATGATGCACAGCGAGGCCGCAATACCGGCTA
CACGCAAAATATCTCCTTTCAACAACCAGAATCCGAAAAATATTTGGCGTATCAGCGCGGGTGGCGGTAA

Protein sequence : 
MPYNSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPGNYLLDILIDDRLLPERY
LVTYLAVDEGKSTKLCLTPDLVNLFGLSTEVRESMTLWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWV
PPSQWGNGVAGTLLDYNLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTETAGEHYRNFDWSQVYAFRAIP
SIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHTNARVVLSQNGRVLYQTNVAPGPFVIQDI
SEAVQGNIDVRVEEEDGRVTVFQVNAASVPFLTRKGAVRYKAALGRPMLGNSASNPTFFSGEFSWGAFNHVSLYGGLMTT
SQDYTSAALGIGQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFMSMSQYLDWL
NGNTALQYDKQAYTVAANQYLAWPDITMYLSVTRRTYWNAASSNNYSLSMSKIFDIGTFKGISATISANKVNNQYANENQ
MFFSLSVPIGIGQQASYDAQRGRNTGYTQNISFQQPESEKYLAYQRGWR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papCb AAL67415.1 truncated PapC Virulence PAI II CFT073 Protein 1e-97 42
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 5e-101 41
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 6e-100 41
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 9e-100 41
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 6e-101 41
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 8e-101 41
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 9e-103 41
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 7e-101 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimD7 NP_994689.1 hypothetical protein VFG1548 Protein 3e-101 41
fimD7 NP_994689.1 hypothetical protein VFG0895 Protein 3e-101 41
fimD7 NP_994689.1 hypothetical protein VFG0884 Protein 3e-101 41