|
Name : gspE (YP_2841) Accession : NP_994147.1 Strain : Yersinia pestis 91001 Genome accession: NC_005810 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3155719 - 3157230 bp Length : 1512 bp Strand : + Note : highly similar to Yersinia pestis CO92 YPO0815 and Yersinia pestis KIM y3203. Contains Bacterial type II secretion system protein E (Interpro|IPR001482, (GO:0006810)). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, (GO:0005524)). Cont DNA sequence : ATGACAGATATTGAGTCTGAGTTCCATACTTTGCCATTAACGTTTAGTTGGTCAAAGAGTCATGGTGTGCTTATTCTGCC TATGGCACAGGGCAGTCAGTTGATTTGTCGTAAATCAGCGACATTGGAGGCTATACTTGAAGGGAATCGGGTGGCTCATA GTCCAATACTTTTTAATTTAGTTACTGATGAAGAGTTTGAAAATAATTTAACTGAACGCTACCAAAATAATTCGGCTGAC CCATATCAGACAATGAGCGTTATCAGCAATGAGATCGACATTTACTCTTTTGCTAACGAATTATCTGACGATGATGATTT ATTGGATATAAATGATGAAGCACCTGTAATAAAATTAATCAATAGCATTCTGGTCGAAGCAATTAAAGAGTTAGCATCTG ATATACACATAGAGTCTTTCGATAAAAAACTTACTGTAAGATTTCGTATTGATGGTGTGTTAAGGAAAATATTGGAATTA CAGCGCCATGTTGCACTATTATTAGTGTCGCGTATAAAAGTCATGGCCAAATTAGATATTGCAGAAAAACGTATTCCACA AGATGGGCGCATAGCTCTAAATTTAGCGGGTAGAGCATTGGATGTTCGTGTTTCGGTATTACCATCTAGCCATGGTGAAC GGGTCGTTATGCGTTTGCTTGACAAAAATAGCATTAAATTGGATTTACCCTCATTAGGTATGTCGAAAGATAACTGTATT TCTATGAATACGCAGGTACATAAACCCCATGGCATTATCTTGGTTGTTGGCCCAACGGGTTCGGGTAAAAGCACTACGTT ATATGCTGCTTTAATGGGGATTGACGCGAATGAGAAAAATATTATGACTGTAGAAGACCCTATTGAGTTCGACATACCTG GTATATCCCAAACGCAAGTAAACCCAAAAATTGAAATGACATTTGCTCGTAGCTTAAGGGCAATATTACGCCAAGATCCT GACGTTATTCTTATCGGTGAAATTCGTGATATTGAAACGGCACAGATAGCGGTCCAAGCTTCTCTAACCGGCCATTTAGT TCTATCTACATTACATGCCAACAGTGCGATAGGTGCAGTGACCAGACTGAAGGATATGAATGTAGAGGCATTTATGCTTT CAAGTTCATTATTGGCCATCATATCTCAGCGGTTGGTTAGAAGATTATGTATAGCGTGTCGCCAAGAGTCGTCAGTGACG GAGAAGGTATTACAACGTCTGAATATTGATGATAAATGCTCTTTGGTTGGTTCGGTGTACCGGGCTAAAGGTTGTAACAA ATGTAATCTTACTGGTTATCGTGGACGTATTGCTCTCCATGAATTTCTCGTAGTGGATAACTTATTGCGGGGGGCTATTT ATAAAGGGCTAGGAGAGTTTGAACTGGCTAAATTGGCCAGTGGGGCTATAAACAGCCTTCTATCTGATGGGATAAGCAAA GTTATTGCAGGGTTAACCACTATAGAGGAACTGGTAAGAATATGCCAAGAGGATGATAATGGCTGTATTTAA Protein sequence : MTDIESEFHTLPLTFSWSKSHGVLILPMAQGSQLICRKSATLEAILEGNRVAHSPILFNLVTDEEFENNLTERYQNNSAD PYQTMSVISNEIDIYSFANELSDDDDLLDINDEAPVIKLINSILVEAIKELASDIHIESFDKKLTVRFRIDGVLRKILEL QRHVALLLVSRIKVMAKLDIAEKRIPQDGRIALNLAGRALDVRVSVLPSSHGERVVMRLLDKNSIKLDLPSLGMSKDNCI SMNTQVHKPHGIILVVGPTGSGKSTTLYAALMGIDANEKNIMTVEDPIEFDIPGISQTQVNPKIEMTFARSLRAILRQDP DVILIGEIRDIETAQIAVQASLTGHLVLSTLHANSAIGAVTRLKDMNVEAFMLSSSLLAIISQRLVRRLCIACRQESSVT EKVLQRLNIDDKCSLVGSVYRAKGCNKCNLTGYRGRIALHEFLVVDNLLRGAIYKGLGEFELAKLASGAINSLLSDGISK VIAGLTTIEELVRICQEDDNGCI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-118 | 54 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-118 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | NP_994147.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-118 | 54 |
| gspE | NP_994147.1 | general secretion pathway protein E | VFG0182 | Protein | 1e-121 | 52 |
| gspE | NP_994147.1 | general secretion pathway protein E | VFG1876 | Protein | 5e-111 | 47 |
| gspE | NP_994147.1 | general secretion pathway protein E | VFG2426 | Protein | 1e-70 | 45 |
