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Name : hofB (YP_0258) Accession : NP_991657.1 Strain : Yersinia pestis 91001 Genome accession: NC_005810 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 259708 - 261264 bp Length : 1557 bp Strand : - Note : highly similar to Yersinia pestis KIM hofB. Contains Bacterial type II secretion system protein E (Interpro|IPR001482, (GO:0006810)). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, (GO:0005524)) DNA sequence : ATGATAAGGCCCCATCAAATGGCTGAATTTATAGTGTCCTCATTTGAAACAATTAGTGATGAATTACACCTTCTCTGTCG GCGTTATCGGGCAGTGGCACTCACTCTTGATGGTAAAAGCCTTTCGATAGCTTCAGCCCAGACCGTTGATGAAGCGTTAT TGACCGCGTTGCGTTTCACATGTGGCCGTCAAGTCAGAGTGGAATATTGGCCCGAAGCCAAGATTGAACAATCATTGTAT TTGGGGAGCCCGACGAAAAATAACCTAAACAGTAGTATTAACAACGGGCTAAATAGCGCGTTGTTATCCCAAAAGGGAGG TGATCCGTCGCGAGTAAAACCGCACAATCAGCAGCAACAGACAATAGATGATACTGTGTTTGATAATGAGAGTGACACAC CCGTCATTCAATTCATAACCCAGACGCTAAGTCTAGCCATTCAAAAACGCGCTTCAGATATCCATTTTGAGCCTTATCAA CACCACTATCGTGTTCGTTTAAGAATTGATGGTGTGTTGCATGAATTCACCCCACCCGAGGCCGAATGGGCAGCTCGGAT TAGCAGTTGCCTGAAGGTCATGGCGAAATTAAATATTGCTGAACGGCGATTACCACAAGATGGTCAACTAACCTTACCCT TTGGTGATTCACACTATTCAATGCGGATAGCGACTCTCCCTACGCAATATGGTGAAAAAGTGGTATTGCGTATTCTTCAA ATACAACAGCAAACCACGTTAGAAAAGCTGGGGATGACGGATGCGGCACTGAAACAATTAACACAGGCATTATCAGCACC ACAAGGGCTGATTCTGGTCACCGGCCCTACCGGTAGTGGCAAAACCATTACGTTATATTGCAGTTTAGCGCGGCTGAATC AGACACAAAGAAACATCTGTAGCGTCGAAGATCCTATTGAGATCCCCGTCAATGGCATTAACCAAACCCAGGTAAACAGC AAGATCGGTCTGGATTTCTCTCGAATACTACGAGCCATCCTACGACAGGACCCTGATGTCATTATGGTTGGTGAAATTCG TGATAATGAAACCGCCAGTATCGCAGTTAACGCGGCCCAGACCGGGCATTTGGTCCTATCGACGCTGCACACTAACTCAA CAGCAGAAACGCTGATACGCATGGCACAAATGGGAATAGAACGCCATTTAATCGCCTCAAGTCTAAAACTCGTCATTGCT CAACGCTTGGTGCGCCGCCTATGTTTACATTGCCGCCAGGCTGCATCTCACCCCTTTATTCCACCAGCTCACATAAGGTC TGGTCCGATCCAACACTATCTAGCTGTAGGTTGTGAGCATTGTTGTACGGGTTATTATGGCCGAACGGGTATTTATGAAA TGCTGAGTGTAACGCCGCAGATTCAGCAAGCCATACTCAATAATGCCAGCCCTGTAAAACTGGTACAAATTGCCCAGAAG CAAGAACAAACAGCCTTACTCTGCTCAGGTTTAGCTTTAATCGAAAAAGGCATCACTACCCTTAGTGAAATTAATCGTGT TGTGGGCTTCGTAGCAGAAACAGAGGTCACCTCTTGA Protein sequence : MIRPHQMAEFIVSSFETISDELHLLCRRYRAVALTLDGKSLSIASAQTVDEALLTALRFTCGRQVRVEYWPEAKIEQSLY LGSPTKNNLNSSINNGLNSALLSQKGGDPSRVKPHNQQQQTIDDTVFDNESDTPVIQFITQTLSLAIQKRASDIHFEPYQ HHYRVRLRIDGVLHEFTPPEAEWAARISSCLKVMAKLNIAERRLPQDGQLTLPFGDSHYSMRIATLPTQYGEKVVLRILQ IQQQTTLEKLGMTDAALKQLTQALSAPQGLILVTGPTGSGKTITLYCSLARLNQTQRNICSVEDPIEIPVNGINQTQVNS KIGLDFSRILRAILRQDPDVIMVGEIRDNETASIAVNAAQTGHLVLSTLHTNSTAETLIRMAQMGIERHLIASSLKLVIA QRLVRRLCLHCRQAASHPFIPPAHIRSGPIQHYLAVGCEHCCTGYYGRTGIYEMLSVTPQIQQAILNNASPVKLVQIAQK QEQTALLCSGLALIEKGITTLSEINRVVGFVAETEVTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-72 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | NP_991657.1 | hypothetical protein | VFG0112 | Protein | 4e-84 | 48 |
| hofB | NP_991657.1 | hypothetical protein | VFG2426 | Protein | 8e-75 | 46 |
| hofB | NP_991657.1 | hypothetical protein | VFG2048 | Protein | 4e-74 | 46 |
| hofB | NP_991657.1 | hypothetical protein | VFG0182 | Protein | 2e-70 | 46 |
| hofB | NP_991657.1 | hypothetical protein | VFG0233 | Protein | 5e-76 | 46 |
