|
Name : psaC (YP_1287) Accession : NP_992653.1 Strain : Yersinia pestis 91001 Genome accession: NC_005810 Putative virulence/resistance : Virulence Product : outer membrane usher protein PsaC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1407327 - 1409840 bp Length : 2514 bp Strand : - Note : highly similar to Yersinia pestis CO92 psaC and Yersinia pestis KIM psaC. Contains Fimbrial biogenesis outer membrane usher protein (Interpro|IPR000015, (GO:0016020)) DNA sequence : TTGAAAAAATTAATAGTTCAATTTACTACTATTACTCTATTGATGAGCACTTCATTTTTAGTGGGTGCCCAGCGTTATTC TTTTGATCCCAATCTGCTAGTGGATGGCAATAACAACACTGATACCTCGTTATTTGAACAGGGCAATGAATTACCGGGCA CCTATTTGGTGGATATTATCTTGAATGGGAATAAAGTGGACTCTACGAATGTGACATTTCATTCGGAGAAATCGCCATCA GGAGAGCCTTTCTTGCAATCTTGCTTAACCAAGGAGCAGCTATCCCGCTATGGTGTGGATGTTGATGCCTATCCCGAGTT ATCTCCAGCATTAAAAAACTCACAGACAAACCCGTGTGTCAATTTAGCCGCTATCCCTCAGGCCAGTGAAGAGTTCCAAT TTTATAATATGCAGTTGGTACTGAGTATTCCACAAGCGGCTTTACGGCCTGAAGGTGAAGTGCCAATAGAACGCTGGGAT GATGGTATTACGGCTTTTTTGCTGAACTACATGGCAAATATCAGTGAAACCCAGTTTCGTCAAAATGGTGGATACCGGCG TTCACAATATATCCAGTTATATCCCGGTTTAAATTTGGGGGCGTGGCGTGTTCGTAATGCGACCAACTGGAGTCAATCTG GCGATAGGGGGGGTAAATGGCAAAGTGCTTATACCTATGCCACTCGTGGGATTTATCGTTTAAAGAGCCGGGTGACCTTA GGGGAGAGTTACACCCCAGGTGATTTTTTCGACAGCATTCCCTTTCGTGGCGTGATGTTGGGGGACGATCCTAATATGCA GCCAAGTAACCAGCGGGATTTTATACCGGTGGTGCGTGGTATTGCCCGTAGTCAGGCGCAGGTGGAAATCAGACAAAATG GTTATCTGATTTATAGTACGGTGGTGCCGCCGGGGCCGTTTGAACTCTCTGACGTGATCCCGAGTAAATCAGGCAGTGAC CTACATGTTAGGGTGCTGGAAAGTAACGGGGCATCGCAGGCGTTTATTGTGCCTTATGAGGTGCCAGCCATTGCATTGCG CAAAGGGCATTTGCGATACAATCTGGTGGCAGGGCAGTATCGCCCCGCCAATGCTGATGTTGAGACGCCTCCGGTCGCTC AGGCAACCGTCGCCTACGGCTTGCCGTGGAACTTGACCGCATTTATCGGTGAGCAGTGGTCGCGGCATTATCAGGCAACC TCTGCCGGATTAGGGGGGCTATTGGGGGAGTATGGCGCATTGTCATCCAGTATCACGCAGGCAACCAGTCAGTATCACCA TCAACAACCGGTTAAAGGGCAAGCCTGGGAGGTTCGATACAACAAAACCTTACAAGCCTCTGATACGTCATTTTCATTGG TGAATAGTCAATACAGCACTAATGGTTTCAGTACGTTATCTGATGTATTACAAAGTTACCGGCAGAGCGGGAGTGGCGAT AATAGAGATAAAATTGACGAAAATTCTCGGTCAAGGGATTTGCGTAACCAAATCAGTGCGGTCATCGGGCAGTCATTGGG CAAGTTTGGCTACCTGAACCTTAATTGGTCGCGGCAGGTCTACCGTGGGCCGATTCCGGCTAAGAATTCATTGGGAATAC ACTATAACCTCAATGTCGGTAATAGTTTTTGGGCACTGAGTTGGGTGCAAAATGCGAATGAGAACAAGAATGATCGAATA TTGAGTTTGTCTGTCAGTATTCCGCTGGGAGGTCATCACGATACTTATGCTTCCTATAGAATGACATCTTCCAACGGGAG CAATGATCATGAGATAGGAATGTACGGCCAGGCTTTTGACTCTCGCTTGAGTTGGAGTGTGCGTCAGGCAGAGCATTATG GTCAACCCAACTCAGGGCATAACAGCGGCTCACTCAGGTTGGGCTGGCAGGGTTCCTATGGCAATATCGCGGGAAATTAC TACTATACTCCGAGCATACGTCAGTTATCCGCTGATGTTTCCGGAGGGGCGATCATCCATCGGCATGGGCTGACATTAGG GCCGCAAATCAATGGCACCTCCGTGCTGGTTGAAGTTCCGGGCGTCGGCGGGGTGACCACCACAGAAGATCGCCGTCTGA AAACAGATTTTCGCGGTTACAGCATTGTGTCTGGCCTCTCTCCTTATCAGGAGCACGATATCGTGTTGGAAACTGCAGAT TTACCGCCGGATGCGGAGGTGGCAAAAACAGATACCAAGGTCTTGCCGACCGAGGGGGCGATTGTTCGTGCCAGTTTTAG CCCGCAAATCGGGGCAAAGGCGCTGATGACGATCACCCGCGCTAATGGCCAAACCATTCCGTTTGGTGCGATGGCGAGCT TGGTTAATCAGTCGGCCAATGCAGCCATTGTCGATGAAGGGGGGAAAGCCTATCTAACCGGGTTACCGGAAACAGGGCAG TTATTGGTGCAATGGGGTAAAGATGCGGGCCAACAATGCCGGGTGGATTACCAGCTCTCGCCAGCGGAAAAAGGTGATAC CGGGCTGTATATGCTCAGCGGAGTATGCCATTAA Protein sequence : MKKLIVQFTTITLLMSTSFLVGAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPS GEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLSIPQAALRPEGEVPIERWD DGITAFLLNYMANISETQFRQNGGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTL GESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGSD LHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQAT SAGLGGLLGEYGALSSSITQATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSGD NRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQNANENKNDRI LSLSVSIPLGGHHDTYASYRMTSSNGSNDHEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNY YYTPSIRQLSADVSGGAIIHRHGLTLGPQINGTSVLVEVPGVGGVTTTEDRRLKTDFRGYSIVSGLSPYQEHDIVLETAD LPPDAEVAKTDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGKAYLTGLPETGQ LLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 2e-176 | 46 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 4e-162 | 44 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 5e-160 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| psaC | NP_992653.1 | outer membrane usher protein PsaC | VFG0853 | Protein | 2e-160 | 43 |
| psaC | NP_992653.1 | outer membrane usher protein PsaC | VFG0944 | Protein | 3e-157 | 42 |
| psaC | NP_992653.1 | outer membrane usher protein PsaC | VFG0849 | Protein | 4e-148 | 41 |
| psaC | NP_992653.1 | outer membrane usher protein PsaC | VFG0857 | Protein | 1e-142 | 41 |
