Gene Information

Name : PSPPH_0787 (PSPPH_0787)
Accession : YP_273070.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Unknown
Product : ISPsy21, transposase orfA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 930061 - 930384 bp
Length : 324 bp
Strand : +
Note : identified by similarity to GB:AAA88437.1; match to protein family HMM PF01527

DNA sequence :
ATGAAAAAACTACCGAAGTACTCCCCAGAGGTCCGTGAGCGGGCCATCAGGATGGTTTTCGAACACCTTCCTGAGTACGA
GTCGCAGTGGGCCACCATCAGTGCCATTGCCCCCAAGATCGGCTGCACGCCCGAGACATTACGGCTGTGGGTTCGCCAAT
CTGAGCGCAACACCGGCCAGCGTGATGGGCTGAGCACAGTCGAACGTGAGCGAGTCAAGCTGTTGGAGCGTGAGAACCGT
CAGTTGCGTCAAGCTAACGAGATCTTGCGCAAGGCCTCAGCCTATTTTGCCCAGGCGGAGCTCGACCGCCCATTCAAACG
ATGA

Protein sequence :
MKKLPKYSPEVRERAIRMVFEHLPEYESQWATISAIAPKIGCTPETLRLWVRQSERNTGQRDGLSTVERERVKLLERENR
QLRQANEILRKASAYFAQAELDRPFKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 2e-24 68
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 2e-24 68
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 2e-24 68
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 2e-24 68
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 3e-24 68
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 3e-24 67
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 3e-24 67
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 3e-24 67
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 3e-24 67
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 2e-22 66
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 2e-22 66
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 2e-22 66
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 7e-21 64
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 5e-21 64
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 7e-21 64
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 5e-21 64
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 7e-21 64
unnamed AAF09023.1 unknown Not tested SHI-O Protein 7e-21 64
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 7e-21 64
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 7e-21 64
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 3e-19 63
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 8e-21 63
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 2e-19 63
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 3e-18 62
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-18 62
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-18 61
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-18 61
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 2e-18 61
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 1e-18 61
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 1e-18 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_0787 YP_273070.1 ISPsy21, transposase orfA VFG0643 Protein 2e-21 64
PSPPH_0787 YP_273070.1 ISPsy21, transposase orfA VFG0606 Protein 2e-21 63
PSPPH_0787 YP_273070.1 ISPsy21, transposase orfA VFG1603 Protein 6e-20 63
PSPPH_0787 YP_273070.1 ISPsy21, transposase orfA VFG1717 Protein 5e-19 61