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Name : clpB2 (PSPPH_0742) Accession : YP_273034.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : clpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 868016 - 870580 bp Length : 2565 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGCGTATCGACAGATTGACCAGTAAATTACAGTTAGCGTTATCCGATTCCCAGTCGCTGGCCGTTGGCCTCGACCATCC CGCCATCGAACCTGCGCACTTGATGCAGGCGCTGCTTGAGCAGCAGGGCGGTTCCATCAAGCCTCTGCTGTTGCAGGTAG GCTTCGACATCAACAGCTTGCGCAAGGAACTGAGCGCAGAGCTGGACCGACTGCCAAAAATCCAGAACCCCACTGGCGAC GTCAACATGTCGCAGGATCTTGCGCGCCTGCTTAACCAGGCCGACCGTCTGGCACAGCAGAAAGGCGATCAATTCATTTC CAGCGAGCTGGTGCTGCTCGCGGCAATGGACGAGAACAGCAAGCTCGGCAAATTGTTGCTGGGGCAGGGCGTCAGCAAGA AAGCTCTGGAAAATGCCATCAACAACCTGCGCGGCGAAGGTGCCGTGAATGACCCTAACGTCGAAGAGTCGCGTCAGGCG TTGGACAAGTACACCGTCGACCTGACCAAGCGTGCCGAAGAGGGCAAGCTCGACCCGGTGATCGGTCGTGATGACGAGAT TCGTCGCACCATTCAGGTCCTGCAACGCCGTACCAAGAACAACCCGGTGCTGATCGGTGAGCCTGGCGTGGGTAAAACCG CTATCGCCGAAGGCCTGGCGCAACGCATCATCAACGGCGAAGTGCCGGATGGCCTGCGCGGCAAACGCTTGCTGTCGCTG GACATGGGCGCATTGATTGCAGGTGCCAAGTACCGTGGTGAGTTCGAAGAGCGCCTGAAATCGCTGCTCAACGAACTGTC CAAGCAGGAAGGCCAGATCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAAGGCGAAGGCTCGATGG ACGCTGGCAATATGCTCAAGCCTGCGCTGGCTCGCGGCGAGCTGCATTGTGTCGGTGCCACCACGCTCAACGAGTACCGC CAATATATAGAGAAGGACGCTGCGCTTGAGCGTCGTTTCCAGAAAGTGCTGGTGGACGAGCCGAGCGAAGAAGACACCAT CGCAATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTCGCCATTACTGACGGTGCGATCATCGCCGCGG CCAAGCTGAGCCATCGCTATATCACCGATCGCCAGTTGCCCGACAAGGCCATCGACCTGATCGACGAAGCGGCCAGCCGC ATTCGTATGGAGATCGATTCCAAGCCTGAAGTGCTTGATCGTCTTGAGCGTCGCCTGATCCAGCTGAAAGTGGAAGCTCA GGCGCTCAAGAAGGAAAAGGATGAAGCGGCTATCAAGCGCTTGGAAAAACTCCAGGAAGAAGTGGTGCGCCTTGAGAAGG AATACGCCGATCTCGAAGAAATCTGGACCTCGGAAAAAGCTGAAGTAACGGGCTCTGCACAGATCCAGCAGAAAATAGAG CAGTCCCGTCAGGAACTGGAAGCGGCGCGTCGTCGTGGCGACCTGAACCGCATGGCCGAGTTGCAGTACGGGATCATTCC GGACCTGGAACGCAGCCTGCAAATGGTCGATCAGCACGGCAAACCCGAGAACCAATTGCTGCGCAGCAAAGTGACCGAGG AAGAAATTGCCGAAGTCGTGTCAAAGTGGACCGGTATTCCCGTGTCGAAAATGCTGGAAGGCGAGCGCGAGAAGCTGTTG CGCATGGAAACCCTGCTGCACAACCGGGTAATCGGTCAGGAAGAAGCGGTGGTCGCGGTCTCCAATGCCGTACGTCGTTC GCGTGCAGGGCTTTCCGACCCGAATCGTCCAAGCGGTTCGTTCATGTTCCTCGGTCCGACCGGTGTGGGTAAGACCGAAC TCTGCAAGGCGCTTGCCGAATTCCTGTTCGATACCGAAGAGGCGATGGTGCGTATCGATATGTCCGAGTTCATGGAGAAA CATTCCGTGGCTCGTCTGATCGGCGCACCACCGGGCTATGTCGGTTACGAAGAGGGCGGCTACCTGACCGAAGCTGTGCG TCGCAAGCCGTACTCGCTGATCCTGCTCGATGAGGTCGAGAAGGCACATTCCGACGTGTTCAACATCCTGTTGCAGGTGC TTGAAGACGGGCGCCTGACTGACAGCCACGGGCGGACGGTGGACTTCCGCAATACCGTGATCGTCATGACCTCCAACCTG GGCTCGGCCCAGATCCAGGAACTGGTCGGTGATCGTGAGGCGCAACGTGCTGCGGTGATGGATGCGGTGGGTACGCACTT CCGTCCGGAATTTGTGAACCGGATTGACGAAGTGGTGATCTTCGAACCGCTGGCGCGTGACCAGATCGCCGGTATCACCG ATATCCAGCTGGGCCGCCTGCGCAAGCGTCTGGCTGAGCGCGAGCTGGCGCTGACCCTGAGCCCCGAGGCGCTGGACAAG CTGATTGCCGTCGGTTACGACCCGGTCTATGGAGCACGGCCGCTGAAGCGGGCGATCCAGCGCTGGATCGAGAACCCGCT GGCACAGATGATCCTCTCGGGCAGCTTCATGCCCGGTACCACCATCACCGGCAAGGTGGTCGACGACGAGATCGTGTTTG CCTGA Protein sequence : MRIDRLTSKLQLALSDSQSLAVGLDHPAIEPAHLMQALLEQQGGSIKPLLLQVGFDINSLRKELSAELDRLPKIQNPTGD VNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLGQGVSKKALENAINNLRGEGAVNDPNVEESRQA LDKYTVDLTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLRGKRLLSL DMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYR QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR IRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLEKEYADLEEIWTSEKAEVTGSAQIQQKIE QSRQELEAARRRGDLNRMAELQYGIIPDLERSLQMVDQHGKPENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGEREKLL RMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSLILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL GSAQIQELVGDREAQRAAVMDAVGTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELALTLSPEALDK LIAVGYDPVYGARPLKRAIQRWIENPLAQMILSGSFMPGTTITGKVVDDEIVFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-149 | 45 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-101 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB2 | YP_273034.1 | clpB protein | VFG2076 | Protein | 6e-103 | 43 |
