Gene Information

Name : PSPPH_5045 (PSPPH_5045)
Accession : YP_277128.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Unknown
Product : peptide ABC transporter ATP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 5716631 - 5718214 bp
Length : 1584 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGCAAGACAACCTGATTGAAATTCGCGACCTGCGGGTCGCCTTCAACGGCCATGAAGTGGTGCATGGCGTCAGCCTCGA
CATCCGCCGTGGCGAGTGCCTGGCGCTGGTCGGCGAATCCGGCTCTGGCAAGTCGGTCACTGCGCATTCGATTCTGCGTC
TGTTGCCGGCGAAAACCGTCAGCACCCAGGGCTCGATTCGCTATGACGGGCTTGATCTGGTCCACGCCAGCGACAAGCAA
TTGCGCAGCCTGCGTGGCAACCGTGTGGCGATGATTTTTCAGGAGCCCATGAGCTCGCTGAACCCGCTGCACACGGTCGA
AAAGCAGATCGGCGAAATTCTCGTCAGTCACAAGGGCCTCAAAGGCAAGGCCGCGCTGAGTCGCACCCTGGAGCTGCTGG
AACTGGTCGGCATCCGCGACCCGCTGTCACGTCTCAAGGCATATCCGCATCAACTGTCGGGTGGGCAGCGCCAGCGCATC
ATGATTGCTATGGCACTGGCTAACGAGCCCGACTTGCTGATCGCCGACGAGCCGACGACCGCGCTGGACGTGACCGTGCA
GGTGAAGATTCTGGAGTTGCTCAAGTCCCTTCAGCAGCGGCTCAACATGTCGTTGTTGCTGATCAGCCACGACCTCAATC
TGGTGCGGCGCATCGCTCAGCGGGTCTGCGTGATGCGTGAGGGCGAGATCGTCGAGCAGGCCGATTGCCAGACGCTGTTC
GACAATCCGCAGCATCCTTACAGCCGCTTGCTGATCAACGCAGAACCAGACGGCGAGCCGGTGCCGTCCACGCACAGCAA
CACGCTGTTGTCGGTGCAGGACCTGAAAGTCTGGTTTCCGCTGGGCAAAGCCTGGTTCAAGCGCGAGCCGCAGTATGTGA
AGGCGGTGGATGGGGTGAGTTTCGAGCTGCTCAAGGGCAAGACACTCGGGATTGTCGGCGAGTCCGGCTCGGGCAAATCA
ACCCTGGGCCAGGCGATTTTGCGTCTTGTCGATTCAGAGGGCAGCATCCGTTTCGGCACCAAGGAGCTGAGCCTGCACAG
TCAGCACCTTATGCGCCCGTTGCGTCGTCAGTTGCAGGTAGTGTTTCAGGACCCGTTCGGCAGCCTCAGCCCGCGCATGA
CCGTGGAGCAGATCATCGCCGAGGGGTTGGTGACGCACAATATCGGCACGCCGAAAGAGCGTGAGCAGACGGTGATCCGC
GTGTTGCAGGAAGTCGGGCTGGACCCGGCCACCCGGCATCGTTACCCGCACGAGTTTTCCGGTGGCCAACGCCAGCGCAT
TTCCATCGCCCGGGCGTTGGTGCTTGAGCCGGATCTGATCCTGCTCGATGAGCCGACGTCAGCGCTCGACCGTACGGTGC
AGAAACAGATCGTCGCCCTGCTGCGTGACCTGCAAATCCGTCATGGCCTGACGTACCTGTTCATCAGCCATGACCTGGCG
GTTGTCCATGCGCTGGCGCATGACCTGATTGTGATCAAGGACGGTAAGGTGGTCGAACAAGGCCCGTCCCGCGAGATCTT
CGCCGCGCCGCAGCAGGCCTATACTCAGGAACTGCTGCGTTCTTCCGGGCTGGTGTTTGCCTGA

Protein sequence :
MQDNLIEIRDLRVAFNGHEVVHGVSLDIRRGECLALVGESGSGKSVTAHSILRLLPAKTVSTQGSIRYDGLDLVHASDKQ
LRSLRGNRVAMIFQEPMSSLNPLHTVEKQIGEILVSHKGLKGKAALSRTLELLELVGIRDPLSRLKAYPHQLSGGQRQRI
MIAMALANEPDLLIADEPTTALDVTVQVKILELLKSLQQRLNMSLLLISHDLNLVRRIAQRVCVMREGEIVEQADCQTLF
DNPQHPYSRLLINAEPDGEPVPSTHSNTLLSVQDLKVWFPLGKAWFKREPQYVKAVDGVSFELLKGKTLGIVGESGSGKS
TLGQAILRLVDSEGSIRFGTKELSLHSQHLMRPLRRQLQVVFQDPFGSLSPRMTVEQIIAEGLVTHNIGTPKEREQTVIR
VLQEVGLDPATRHRYPHEFSGGQRQRISIARALVLEPDLILLDEPTSALDRTVQKQIVALLRDLQIRHGLTYLFISHDLA
VVHALAHDLIVIKDGKVVEQGPSREIFAAPQQAYTQELLRSSGLVFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 2e-101 44
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-86 43
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-86 43
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 3e-86 43
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-86 43