Gene Information

Name : cadR (PSPPH_4870)
Accession : YP_276962.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Resistance
Product : Cd(II)/Pb(II)-responsive transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 5539052 - 5539498 bp
Length : 447 bp
Strand : +
Note : identified by similarity to GB:AAK48830.1; match to protein family HMM PF00376; match to protein family HMM TIGR02047

DNA sequence : 
ATGAAAATCGGCGAACTGGCAAAACTGACCGACACCCAGGTCGAAACCATCCGCTATTACGAGCGCGAAGGCCTGCTGCC
CGCACCTGCCCGCAGCGATGGCAACTACCGGCTGTATACCCAAGCACACATGGAGCGTCTGTCGTTTATCCGCAACTGCC
GCAGCCTGGACATGACCCTGGAGGAAATCCGCAACCTGCTCAGCCTGCGCGACAGCCCGCAGGACCAGTGCGAAAGCGTC
AATGCGCTGATCGACGAACACATCGAACACGTCAACGCCCGGGTCGCGAGCCTGCAAGCGCTTCAGGAACAACTACTCGA
CCTGCGCCGCCGCTGCAGCGATGGCGCGGCAGAACACTGCGCGATACTTGAGAGGCTGGAAGTGACGGGCGCTGTTGCAG
CGCCAGAGGGCGAGGCTTCACATGTGGGGAGGAGTCATGGGCATTGA

Protein sequence : 
MKIGELAKLTDTQVETIRYYEREGLLPAPARSDGNYRLYTQAHMERLSFIRNCRSLDMTLEEIRNLLSLRDSPQDQCESV
NALIDEHIEHVNARVASLQALQEQLLDLRRRCSDGAAEHCAILERLEVTGAVAAPEGEASHVGRSHGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-34 54
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 6e-33 50
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 4e-33 50
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 4e-33 50
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 6e-33 50
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 9e-33 49
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 1e-32 49
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 9e-33 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cadR YP_276962.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0058 Protein 3e-52 78
cadR YP_276962.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0301 Protein 2e-31 56