Gene Information

Name : PSPPH_4828 (PSPPH_4828)
Accession : YP_276924.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5481097 - 5481771 bp
Length : 675 bp
Strand : -
Note : identified by similarity to SP:Q02540; similarity to GB:CAB56468.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGAATCCTTGTCGTAGAGGACGAGCCGAAAACTGCCGAGTACATGCATCAGGGTCTGACCGAAAGTGGCTATATCGT
CGATATCGCTGCAACCGGGCTCGATGGCCTCTATCTCGCGCAGCATCAGGCTTACGATGTGGTGATACTGGATGTGAACC
TGCCAGAAATGGACGGCTGGGAGGTATTGAGTCGCCTGAGGAAGACGGTCAGTACGCGCGTCATGATGGTCACCGCACGA
GGGCGCCTGGAAGAGAAGGTCAAGGGCCTGGAATTGGGCGCAGATGACTATCTGGTCAAGCCGTTTGAGTTTCCCGAGCT
ATTGGCAAGGGTCCGCACGTTGATGCGGCGCAGCGAGCAGACCACCACCTCCAAGGTGTTGCAGGTTGGCGATCTGGAGC
TTGATCAAGGGCGGCACCGGGCGTTTCGCGGCAGCCAGCGCATCGACCTGACCACCAAGGAGTTCGCGCTGCTGCACTTG
CTGATGCGTCACAGCGGTGAAGTCATGTCGCGTACCCAGATCATTTCTCTGGTCTGGGACATGAACTTCGATTGCGACAC
CAATGTGGTGGAAGTGTCGATCCGTCGCCTGCGCGCGAAGATCGACGATCCTTTCGAGACCAAGCTGATCCACACGTTGC
GCGGCGTGGGCTATGTGCTGGAAGTGCGTGAATGA

Protein sequence : 
MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWEVLSRLRKTVSTRVMMVTAR
GRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHL
LMRHSGEVMSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEVRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-55 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0083 Protein 8e-63 60
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-65 60
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0125 Protein 2e-65 59
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0638 Protein 1e-55 57
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-59 55
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-62 54
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator BAC0347 Protein 5e-57 52
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 2e-37 42
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 2e-33 41
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator NC_012469.1.7685629. Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator VFG0596 Protein 5e-56 52
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator VFG1389 Protein 4e-35 44
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator VFG1390 Protein 2e-38 43
PSPPH_4828 YP_276924.1 DNA-binding heavy metal response regulator VFG1386 Protein 8e-37 41