Gene Information

Name : PSPPH_4365 (PSPPH_4365)
Accession : YP_276481.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Unknown
Product : ISPsy18, transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3328
EC number : -
Position : 4987334 - 4988593 bp
Length : 1260 bp
Strand : -
Note : identified by match to protein family HMM PF00872

DNA sequence :
ATGCCGACCAAAAAGAAGTCCGCCAATGCAACAGCGAGGGAGTTGCCCTCGATTCCCCAAGAGCTGATCGAGCAGTTTGT
TAAAGGCCCGATGAGCGCCGAAGCCATTCAAGACGCGTCCATGGCGTTCAAGAAGGCTCTGATCGAGCGTGCGCTAGGCG
CCGAGCTGGGTCACCACCTTGGTTATCCTCAGGGCGCGGAGCGCCCTGAGGAGTCGACCAATCAGCGCAATGGCAAAAGC
AGCAAGACGGTTCTGACCGACGACGGGCCGCTTCGCCTGGATATCCCCAGAGACCGCGATGGTAGCTTCGCCCCGATCCT
GATTCCCAAGCACGAACGACGTTTTACAGGCTTCGACGACAAGATAATTGCCATGTACGCCCGGGGCATGACGGTGCGTG
AGATCCGCGCTTTTCTATCTGAGCAGTATGGAACTGACGTGTCCCATGACTTCATCAGCTCAGTCACCGATGCGGTCATG
GAAGAGGTGGGCGCTTGGCAGCAACGACCCTTGGAACCGATGTATCCGGTGATCTTCTTCGATGCGTTACGGGTCAAAAT
CCGGGACGAGGGGTTAGTGTGCAACAAGGCTATTTATCTGGCGCTGGGGGTATTACCTGATGGCACGCGCGACATTCTGG
GTATATGGATCGAGAGCACCGAGGGTGCCAAGTTTTGGATGAAGGTGTTCAACGACCTCAAGACTCGTGGCGTTGAAGAT
GTTCTGATCGCCGTCACGGATGGCCTCAAAGGAATACCGGAGGCGTTGGGGGCGGTTTTTCCTGCCACGACGCTGCAAAC
CTGCATCGTGCATCTGATCCGCAACAGCTTGGACTATGCCGCTTGGGATAAACGTCGGGCACTGGCCAAAGCACTCAAGC
CGATCTACCAGGCGATCAATGCCGATGTGGTTGAGCAAGAGCTTAACGCCTTTGAAGCGGGCCCCTGGGGCAAGCAGTAT
CCGACTGTAGTTGCTGCATGGCGTCGCGCCTGGGATCGGGTTATACCGTTTTTTGTTTTTCCGGCGGGCATTCGCAAAGT
GGTTTACACGACCAATGCCATCGAGAGCATCAATGCCCAGTTACGCAAGATCATCAAGACTCGAGGGCACTTCCCGACCG
ATGAGGCTGCGACGAAACTGATATGGCTTGGGTTGCGCAACATCACCGCCAACTGGGGTCATGCGGCACACGACTGGAAA
GTGGCAATGAATCAATTTGCGATCCTGTACGGAGACCGATTTACCAGACCGAGCTGGTAA

Protein sequence :
MPTKKKSANATARELPSIPQELIEQFVKGPMSAEAIQDASMAFKKALIERALGAELGHHLGYPQGAERPEESTNQRNGKS
SKTVLTDDGPLRLDIPRDRDGSFAPILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLSEQYGTDVSHDFISSVTDAVM
EEVGAWQQRPLEPMYPVIFFDALRVKIRDEGLVCNKAIYLALGVLPDGTRDILGIWIESTEGAKFWMKVFNDLKTRGVED
VLIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYAAWDKRRALAKALKPIYQAINADVVEQELNAFEAGPWGKQY
PTVVAAWRRAWDRVIPFFVFPAGIRKVVYTTNAIESINAQLRKIIKTRGHFPTDEAATKLIWLGLRNITANWGHAAHDWK
VAMNQFAILYGDRFTRPSW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp7109-23 YP_001800851.1 transposase for insertion sequence Not tested Not named Protein 5e-86 46
api41 CAF28515.1 is285 transposase Not tested YAPI Protein 2e-95 44
CDHC03_2103 YP_005139146.1 transposase-like protein Not tested Not named Protein 1e-84 44
tnp7109-31 YP_001800937.1 transposase for insertion sequence Not tested Not named Protein 1e-81 43
CPR_0630 YP_697957.1 ISCpe3, transposase Not tested Not named Protein 7e-81 43