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Name : kdsD (PSPPH_4146) Accession : YP_276268.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : arabinose 5-phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 4731506 - 4732480 bp Length : 975 bp Strand : + Note : identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 DNA sequence : ATGAACCAATCCAGTGACCTGATCCAATCGGCGCAACGCACCATTCGCCTTGAGATAGAAGCCATACAAGGCTTGCTTGA ACGTCTTGACGGCGATTTCGTGCGCGCGTGCGAAATGATCCTCGCCAGCAAAGGCCGAGTTGTTGTGGTCGGCATGGGCA AGTCCGGACACATCGGCAACAAGATTGCCGCCACACTGGCGAGCACGGGCACTACCTCTTTTTTCGTGCATCCAGCTGAA GCCAGTCATGGCGACATGGGCATGATCACCCGCGATGACATTATCCTGGCCCTGTCGAACTCCGGCAGCACCCACGAGAT CGTGACCCTGCTGCCGCTGATCAAGCGTCTGGGCATAAAGATGATCAGCCTGACCGGCGACCCCGAGTCCATTCTGGCCA AGGCTGCCGACATCAATCTCAACGCCCATGTCGTGCACGAGGCCTGCCCGCTCAATCTGGCACCGACCTCTTCGACCACC GCGGCACTGGTCATGGGCGACGCTCTGGCCGTGGCGCTGCTGGACGCACGGGGTTTCACCGCTGAAGACTTTGCATTCTC CCATCCGGGCGGAGCGCTGGGTCGTCGCCTGCTGCTCAAGGTCGAGAATGTCATGCACTCCGGCGACGCGCTGCCCAGCG TTCAACGCGGCACGCTGCTCAGGGATGCGCTGCTGGAAATGACCCGCAAGGGCCTGGGCATGACCGCGATTGTCGAAGCT GACGGCACACTGGCCGGTATCTTCACCGACGGCGATTTGCGCAGAACGCTGGACCGCCCCGTCGATATTCGCCAGACCAT CATTGATGAAGTCATGACCCTTCACGGCAAGACGGCCCATGCAGAAATGCTGGCCGCCGAAGCGCTGAAAATCATGGAGG ACAACAAAATCAGTGCGCTTGTTGTCGTAGACCAGTACGACCGGCCGGTTGGCGCGTTCAACTTGCAGGATCTTTTGCGC GCAGGCGTCATGTAA Protein sequence : MNQSSDLIQSAQRTIRLEIEAIQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGNKIAATLASTGTTSFFVHPAE ASHGDMGMITRDDIILALSNSGSTHEIVTLLPLIKRLGIKMISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTT AALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGDALPSVQRGTLLRDALLEMTRKGLGMTAIVEA DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISALVVVDQYDRPVGAFNLQDLLR AGVM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 9e-56 | 44 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 4e-56 | 44 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 1e-55 | 44 |
