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Name : PSPPH_4043 (PSPPH_4043) Accession : YP_276171.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : insecticidal toxin protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 4619489 - 4622281 bp Length : 2793 bp Strand : - Note : identified by similarity to GB:AAO17204.1; match to protein family HMM PF05593; match to protein family HMM TIGR01643 DNA sequence : ATGGTCAGTAGCGCGGTAAATGCACGTACGCCGGAATTGATCGTTTCCGAGGTTCGTGGGCTGGTCGTGCGCCAAGTCCT TTTACATCGAGCCGAAGCCACGCAAGCGGCAGCAATCAGAGTTACCAGGCAGCGTTTCGACCCGGCAGGCAGGATGATTG CCGCCACTGATCCACGCCTCGCCAACGCCAACCGGAGCACTGTCTACAGCCTTGGCGGCAACGCGTTGGCCACCGAGAGT GTCGATGCCGGCTGGCGACTGATGTTATTCGGCGAGGCGGGCCAGGTTTTGGGCGGCTGGGACGGTCGTGGCACCGAGCG GCAGCTCGAGTACGACCAGCTGCTACGCCCGACGAGGATCATCGAACAGCATCGGTGCGTGGAGCGGTTCACCTACGGCC AGGCAGATGCAGCGGCACACAACCAATGCAATCAATTGATTCGCCATGACGATACGGCGGGCTCGCGCTTGCTGCAGGAT TACAGCCTGAATGGCTCGGTACTCAGCGATACACGACATTTCCTGCTCGTCGCCGAAGGACCGGACTGGCTACCGGCCGA GCGTGATCGCGATGCGCTGCTGGAGCCGGTCGGACTACAGACCCGTTGGGCGTTCAACGCACAGGGCGAAGCGCTTGCGC AGACCGACGCCAAGGGTAATACCCAACTCTCCGCTTATAACGTAGCCGGACAGTCGAACAGCACAGATCTGATGCTGAAC GGCAGCACGCACTCGCAGACACTGGTCAGTGCCATTCACTACAACGCCTTCAATCAGGTTGAACAGGAAACAGCAGGCAA TGGCGTCGCCAGCCTTTATTCCTATGATCAGCAGGACGGCAGGCTGACCGGGCTGAGCGCGACCTCTGCTGACGGCACGT TGCTGCAGCAACTCGATTACAGCTATGACCCGGTGGGCAATATCCTGCTCGTCACCGATGCGTCCCAACCAGACCGGTAT TGCGACAACCAGCTTATCGAACCGATCAGCCGTTACCGTTACGACACGTTGTACCAGTTGATCGAAGCCACAGGCCGGGA GGTCAGAAACGGGGCAAGCCATGGTCCGGCGCTGCCCGGTTTACAACCCGTTTCGACGCTTAATCCCTGTCAGGTCAGCA ACTACAAACAGCGTTACAGCTACGATGCAGCGGGCAATCTGCTGCAAATGCGCCACGAAGGCGCGCACAACTTCACCCGC AACATGCGCGTTGCCCCGGACAGTAATCGCAGCCTGCCCGACGATGACGGCGATGTGGATTTCGCTACGGGTTTTGATGC CAACGGCAATCTGCTGCAACTGGTTCGCGGGCAGGTTATGGGCTGGGATGCGCGTAATCAGTTGCAGCACATCACCACCG TGCAACGGGAAGACGGACCGAATGATGACGAGCGCTATGTCTATGACGGCCAGGGTCAACGTTGTCGCAAGGTCAGTACT GCTCAGGCACCAGGTCGCACGCTGATCAACGAAGTGCGCTACCTGCCAGGACTGGAAATTCGCACCACGGCCGATGGAGA AATCCTCCACGTCGTTACGACTCAGGCGGGTCGCAACAGCGTGCGGGTGTTGCACTGGGAGGCTGGAAAACCAGGCGCTA TTGCGAACGATCAGGTGCGTTACAGCCTGGGTGATCATCTGGGCTCGAGCACGCTGGAGCTTGATCAGCAAGGTGGCCTG ATCAACCAAGAAAATTATTACCCCTTCGGCGGCACGGCCTGGTGGGCGGCGCGTAGCGCAGTTGAAGCCAAGTACAAAAC CGTGCGGTATTCAGGCAAGGAGCGAGACGCCAGCGGGCTTTATTATTACGGGTTCAGGTATTACGCGTCGTGGCTGCAGC GGTGGATAAACCCGGACCCGGCGGGGGATGTGGATGGGTTGAATTTTTATGCAATGGTTCGGAATAATCCGACAGCTTAC ACAGATCCTTATGGACTGACCGGGGAATATCGTGGGCGGAGAGATAGTGTAGAGCGTGATGTATTATTTGACACCGGCAT CCTCGCGCGAGGTAGAAGCGAAATATCGAAGCTTCCAAAAACTGAACCTGATCATTTGAACCGCGCGTTCAAACTCGCTT ACTCTGCATGGAGTGAAAGTTCAAAAACCCTCGCAGCACCGGCGATAGCGCAACTGCCTGAGCTATTGATGAGTTACGTG TTGGGGGACGGCGCCAAGGAGAGGCGTGGCGAACTGGCTGAAACATACAGTACAACGGCTTGCATGCTGAAAGACTACAA TGAAGGTGGGGGGCATTACAATCAGATAGACATAATGAAAAACTATTCGGGGACGGATGCATTTATTGATCTTGAGGATC AGCATAAACGCATTTTCATGGTCGAGGATCTTTTGAACGTCCACGTTGCGGGTACATCAATCACGCTTGGGCATGAAGTT TCTCACACAGTTCTCAATAACAAAATTCTTGATTTCGGGTATCTGGCAGCGGGTCTCCGGGACGAAAAAGCGGCAGCGAT CAGTGAGGATAGCTACATACAGCACCTTGAAGGCGGGCTTAATTCAGCGATGGAGTATTCTTGCGGGCGTAAGAACGCCC ACATGTTCAGAAGTGTCGAGCGGATGATAGGAAAGAATGTATTGAGTACCGAGAGGGCCCTGAGACTCTTCGAGGTCAAG AGCATGCAGGACATGAAAATCGAGCGTTTGAGCGACCCCGCAGTGCGGACCAACTTGTTGATGAACAATGCAGACAGCTT GGCGATGTTAAGTATTATGCTTGCGGAATCGACGGTAAAAAGCAGTCTCAGACGCTGGGGAAAGTTGTTCTGA Protein sequence : MVSSAVNARTPELIVSEVRGLVVRQVLLHRAEATQAAAIRVTRQRFDPAGRMIAATDPRLANANRSTVYSLGGNALATES VDAGWRLMLFGEAGQVLGGWDGRGTERQLEYDQLLRPTRIIEQHRCVERFTYGQADAAAHNQCNQLIRHDDTAGSRLLQD YSLNGSVLSDTRHFLLVAEGPDWLPAERDRDALLEPVGLQTRWAFNAQGEALAQTDAKGNTQLSAYNVAGQSNSTDLMLN GSTHSQTLVSAIHYNAFNQVEQETAGNGVASLYSYDQQDGRLTGLSATSADGTLLQQLDYSYDPVGNILLVTDASQPDRY CDNQLIEPISRYRYDTLYQLIEATGREVRNGASHGPALPGLQPVSTLNPCQVSNYKQRYSYDAAGNLLQMRHEGAHNFTR NMRVAPDSNRSLPDDDGDVDFATGFDANGNLLQLVRGQVMGWDARNQLQHITTVQREDGPNDDERYVYDGQGQRCRKVST AQAPGRTLINEVRYLPGLEIRTTADGEILHVVTTQAGRNSVRVLHWEAGKPGAIANDQVRYSLGDHLGSSTLELDQQGGL INQENYYPFGGTAWWAARSAVEAKYKTVRYSGKERDASGLYYYGFRYYASWLQRWINPDPAGDVDGLNFYAMVRNNPTAY TDPYGLTGEYRGRRDSVERDVLFDTGILARGRSEISKLPKTEPDHLNRAFKLAYSAWSESSKTLAAPAIAQLPELLMSYV LGDGAKERRGELAETYSTTACMLKDYNEGGGHYNQIDIMKNYSGTDAFIDLEDQHKRIFMVEDLLNVHVAGTSITLGHEV SHTVLNNKILDFGYLAAGLRDEKAAAISEDSYIQHLEGGLNSAMEYSCGRKNAHMFRSVERMIGKNVLSTERALRLFEVK SMQDMKIERLSDPAVRTNLLMNNADSLAMLSIMLAESTVKSSLRRWGKLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| TccC3 | AAO17204.1 | TccC3 | Virulence | tcd island | Protein | 3e-100 | 41 |
| TccC4 | AAO17196.1 | TccC4 | Virulence | tcd island | Protein | 4e-101 | 41 |
