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Name : PSPPH_3656 (PSPPH_3656) Accession : YP_275798.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4198421 - 4200415 bp Length : 1995 bp Strand : - Note : identified by match to protein family HMM PF02719; match to protein family HMM PF07993 DNA sequence : ATGAGCAGGTTGCGGGCCAGTTTGCTGGCTCTACCACGCCGCAAAAAGCGAATAATTCAGGTCGCTGCTGACGTTCTTCT TGTCTGGCTCGCGCTGTGGATGTCGTTTGTCGTGCGCTTGGGAATTGATGAGTTGATCAATCCTTTGGAAAAACATACCT GGCTTTTCATCAGTGCGCCGCTGGCTGCTATCCCATTGTTCATTCGTTTTGGCATGTACCGCGCGGTGATGCGCTATTTC GGTAACGACGCCCTGATTGCGATCATCAAGGCCGTCACGATGTCCTCTCTGATCCTCGGTTGCATGGTCTACGTTTACAG CAATCACCAGCAATTGGTGCCGCGCTCGGTCATCTTCAACTACTGGTGGCTGAGCATGGTGATGATCGGCGGCCTGCGCC TGGCCATGCGGCAGTATTTTCTCGGCGACTGGTTCGCCGCAGCGCAACACGTACCCTTTGCCAAGAGTGACAACGGTCTG CAGAAGGTCGCCATTTACGGCGCTGGCGCGGCAGGAAACCAATTGGTTGCTGCCTTGCGCATGGGACGCCTTATGCATCC GGTGGCGTTCATTGACGATGACGAGTCGATTTCCAATCGGGTGATTTCCGGCCTTCAGGTCTACAAGCCCAGAAATATCC AGCGAATGATAGATTCCACTGGTGCTCAGGAAATCCTGTTGGCGATCCCGTCTTCATCGCGCGGGCGTCGCCGGGAAATT CTGGGCTTTCTGGAAGGCTTCCCGCTCCACGTACGAAGCGTTCCCGGCTTCATGGACCTTGCCGCCGGCAGGGTCAAGGT AGACGATCTTCAGGAAGTCGATATCGCGGACCTTCTGGGACGCGATGCAGTTCCGGCCCGAGACAACCTGCTTGAGCACT GCATAAAGGGCAAAACGGTGCTGGTAACCGGCGCAGGCGGCTCGATCGGCTCAGAGTTGTGCCGACAGATATTACTGTTG CAGCCCACCCAGTTGCTGTTGCTCGACCACAGCGAGTTCAACCTCTACAGCATTCTTACCGAGCTTGAGCAGCGAGCGGC TCGCGAGTCTCTCTCGGTCAAGTTGCTGCCCATACTCGGGTCGGTACGCAATCACCCCAAGCTGCTGTCGATCATGAAAA CCTGGAAGGTCGACACGGTCTATCACGCTGCAGCCTACAAGCATGTCCCTATGGTCGAGCACAATATTGCCGAGGGAGTC ATCAATAACGTCGTCGGTACGCTCAATACCGCACAGGCGGCGTTGCAGGCGGGTGTTTCCAACTTCGTTCTGATTTCCAC CGACAAGGCAGTGCGCCCGACCAACGTGATGGGCAGCACCAAGCGCCTTGCCGAACTGATACTGCAGGCGCTGAGTCGCG AGACCGCGCCGGTGATATTCGGTGACAAGGCCAACGTTTATCAGGTCAACAAGACGCGCTTCACAATGGTTCGTTTCGGC AATGTGCTCGGGTCGTCCGGTTCGGTTATTCCGCTGTTTCACAAGCAGATCCAGTCAGGCGGACCGTTGACGGTGACGCA TCCCAAGATCACCCGTTACTTCATGACCATCCCCGAGGCCGCGCAGCTGGTCATTCAGGCGGGTTCCATGGGGCATGGTG GGGATGTGTTCGTTCTGGACATGGGCGAGCCGGTCAAGATTGTCGAACTGGCCGAGAAAATGATCCACCTGTCCGGTCTG TCCATTCGCTCCGAGAAAAACCCGCAGGGAGATATCTCCATCGAATTCACCGGGCTGCGTCCTGGTGAAAAGCTCTATGA AGAGCTGTTGATCGGGGACAATGTCGTTGCCACCGAGCACCCGATGATCATGAGTGCGAATGAAGATTTCCTGCAGTGGG ATGTCTTGAAGGGCCGTCTTGTAAAACTGCTGGATGCGGTGGACCGCGACGATTACAACAGCGTGCGTCAATTGCTGCGA GAAACCGTAAACGGGTATGCGCCAGAAGGTGAAATCGTTGACTGGATGTATCAGGAGCGCAGCGGCGAACCGTGA Protein sequence : MSRLRASLLALPRRKKRIIQVAADVLLVWLALWMSFVVRLGIDELINPLEKHTWLFISAPLAAIPLFIRFGMYRAVMRYF GNDALIAIIKAVTMSSLILGCMVYVYSNHQQLVPRSVIFNYWWLSMVMIGGLRLAMRQYFLGDWFAAAQHVPFAKSDNGL QKVAIYGAGAAGNQLVAALRMGRLMHPVAFIDDDESISNRVISGLQVYKPRNIQRMIDSTGAQEILLAIPSSSRGRRREI LGFLEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPARDNLLEHCIKGKTVLVTGAGGSIGSELCRQILLL QPTQLLLLDHSEFNLYSILTELEQRAARESLSVKLLPILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGV INNVVGTLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANVYQVNKTRFTMVRFG NVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGHGGDVFVLDMGEPVKIVELAEKMIHLSGL SIRSEKNPQGDISIEFTGLRPGEKLYEELLIGDNVVATEHPMIMSANEDFLQWDVLKGRLVKLLDAVDRDDYNSVRQLLR ETVNGYAPEGEIVDWMYQERSGEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-77 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-76 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPPH_3656 | YP_275798.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 6e-114 | 47 |
| PSPPH_3656 | YP_275798.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 3e-76 | 43 |
