Gene Information

Name : PSPPH_3453 (PSPPH_3453)
Accession : YP_275609.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3988474 - 3989136 bp
Length : 663 bp
Strand : +
Note : identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGCCTGCTTCTTGTCGAGGATGATCGTGCGATTGGCCAAGGCATCCGTGTGGCCCTTAACACCGAGGGCTACACGCT
GGACTGGCTGGAAGACGGGCTGAGCGCGCTGCACGCCCTGCGCAGCGAACCCTTCGACCTGTTGCTGCTCGACCTCGGCC
TGCCGCGCATGGATGGTTTCGATCTGCTGCGCCAGTTGCGCGCCGAAGAGCTTGCCCTGCCGGTGCTGATCCTGACCGCG
CGCGACGGCACCGCCGACCGCATTGCCGGCCTGGACGCCGGTGCCGACGACTACCTGATCAAGCCGTTCGACGTCGATGA
ACTCAAAGCCCGGGTCCGGGCTTTGCTCAGGCGTAGCCAGGGACGTGCGCAGCCGTTGCTGGAACACGCCGGCATCAGCC
TCGACCCGGCTTCGCAGCAGGTCAGTTTTCAGGGCAGCGAAGTGCCGATGACGCCAATGGAATATCAACTGCTGCACCAA
TTGATGATCCGCCCCGGCAAGGTGGTCACCCGCGAGCGCTTGTCCAATACCCTGTATGGCTGGCAGGACAAGGTCGAAAG
CAACACTCTGGAAGTGCTGATTCACAACCTGCGCAAGAAACTGTCCACCGAACTGATCCGCACCGTGCGCGGCGTCGGCT
ACCTGCTGGAGCTCAAGGCATGA

Protein sequence : 
MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRMDGFDLLRQLRAEELALPVLILTA
RDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQ
LMIRPGKVVTRERLSNTLYGWQDKVESNTLEVLIHNLRKKLSTELIRTVRGVGYLLELKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-33 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB BAC0487 Protein 1e-33 48
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB BAC0197 Protein 2e-31 42
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB NC_002516.2.879194.p Protein 2e-25 42
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB CP001918.1.gene5135. Protein 2e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB VFG0473 Protein 7e-38 49
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB VFG1390 Protein 1e-32 43
PSPPH_3453 YP_275609.1 DNA-binding response regulator QseB VFG0596 Protein 1e-24 41