Gene Information

Name : PSPPH_3294 (PSPPH_3294)
Accession : YP_275453.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3817918 - 3818607 bp
Length : 690 bp
Strand : +
Note : identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCATATCCTGCTGATTGAAGACGACACCAAAACCGGTGAATACCTGAAGAAGGGCCTGGGTGAATCCGGCTACAAGGT
CGACTGGACCCAGCACGGGGCCGACGGCCTGCACCTGGCACTGGAAAACCGCTACGACCTGATCGTGCTGGATGTGATGC
TGCCAGGCATCGATGGCTGGCAGATCATCGAAGTGCTGCGCGCCCGGCAGGACGTGCCGGTGCTATTCCTGACCGCTCGC
GACCAGTTGCAGGACCGGATTCGCGGGCTGGAGCTCGGCGCTGACGATTATCTGGTCAAACCGTTTTCCTTCACTGAACT
GCTGCTGCGCATCCGCACCATCCTGCGCCGGGGCGTGGTGCGCGAGGCAGACCATTTTCATCTGGCCGACCTTGAACTGG
ACCTGCTGCGCCGCCGCGTGACGCGTCAGCAGCAGGTCATCGTGCTGACCAACAAGGAGTTTGCCCTGCTACACCTGTTA
TTGCGCCGCGAAGGCGACGTGCTGTCACGGGCACAGATTGCCTCGGAAGTCTGGGACATGAATTTCGACAGTGACACCAA
TGTTGTGGACGTCGCCATCAAGCGCCTGCGCAGCAAGGTCGACCTGCCCTACCCGGTCAAGCTCATCCACACCGTGCGCG
GTATCGGTTATGTGTGCGAGGTGCGGCCATGCGACGCCAGCCTTCCCTGA

Protein sequence : 
MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTAR
DQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLL
LRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-45 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-44 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0197 Protein 4e-56 64
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-54 62
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0083 Protein 2e-48 59
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0308 Protein 5e-47 58
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0638 Protein 7e-43 57
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0111 Protein 3e-50 57
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator BAC0347 Protein 2e-42 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-45 56
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator VFG1390 Protein 5e-27 43
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator VFG1389 Protein 6e-24 43
PSPPH_3294 YP_275453.1 DNA-binding heavy metal response regulator VFG1386 Protein 6e-24 41