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Name : PSPPH_0312 (PSPPH_0312) Accession : YP_272615.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : sigma-54-binding protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 353955 - 354905 bp Length : 951 bp Strand : + Note : identified by similarity to SP:P17899; match to protein family HMM PF00158 DNA sequence : ATGAGCCTTCACGAAAATTTCGGTCAGCCGCTGCTGACTTTCCCCGATGCAGAAAAAAGCCCGCTGAGCATTCGCGCCAA GGCGCTGGTATTCATCGACCCGCGCTCGCGCCGTTTACGCGAAGAAATGGAGCAGCTGGCGCCTCGTTCGCTGCCGGTCT TGATCCGTGGTGAGTCCGGGACTGGTAAGGAATTACTGGCGCGGCATATTCATCGCGGCAGTGATCGCTCGGGCTTGTTC GTTTCAGTCAACTGCGGTGCCATCAGCCCGACTTACGCCGATGCGGAGTTGTTCGGTTATGCCGCCGGAGCGCACAGCGG TTCGGTCAGCAGTCGGGCCGGCTGGTTTGGCTCGGCCAACGGCGGCACTTTGTATCTGGATGAGATCGGCGACTTGCCGC TGCCCATTCAGGTCAAGCTGCTCGCCGCCCTGGAAAACCACGAAGTCACACGAGTGGGCGCGCACCAGCCGAGCCCGGTC GATGTGCGTCTGGTAGCCGCCACCAGCATCGATCTGGCACAGGCGGTGGCTGCCGGAAAATTTCACGAGCGGCTTTATCA CTACCTGAGCGAGGGGCGTCTTGACCTGCCGGCGTTGCGCGAGCAACCGGGCAATATCCTGCCGCTGGCCGAATATTTTG TCGGTATCTACAGCCAGCGCCTCAGCCTGCCTGTGCAACTGATCAGCGAAGACGCGCAGCGCACGCTTGAAGCCCACAGC TGGCCCGGCAACACCCGTGAGCTGGAGAACGTCATTCACTTTGCCTTGCTGGTCAGCAGTGGCGACGAAATTCGGGCTGA AGATATCAATCTGCCGGATATTGCCGCGCCACTGACGCTGATCGAGCGTCAGGCCAGGTTGTTGGTCAGCAGCGGGGATC GCGAGCAGCTTCGCGCGCTGCGGCGATTGCTCGAAACGGTGACATCGCAGCTTGAGCAGAACCCTGCGTGA Protein sequence : MSLHENFGQPLLTFPDAEKSPLSIRAKALVFIDPRSRRLREEMEQLAPRSLPVLIRGESGTGKELLARHIHRGSDRSGLF VSVNCGAISPTYADAELFGYAAGAHSGSVSSRAGWFGSANGGTLYLDEIGDLPLPIQVKLLAALENHEVTRVGAHQPSPV DVRLVAATSIDLAQAVAAGKFHERLYHYLSEGRLDLPALREQPGNILPLAEYFVGIYSQRLSLPVQLISEDAQRTLEAHS WPGNTRELENVIHFALLVSSGDEIRAEDINLPDIAAPLTLIERQARLLVSSGDREQLRALRRLLETVTSQLEQNPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-39 | 42 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-39 | 42 |
