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Name : gspE1 (PSPPH_3064) Accession : YP_275240.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : general secretion pathway protein GspE Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3556712 - 3558469 bp Length : 1758 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02533 DNA sequence : ATGTCCCTCCGAAGTAGCAAAATGCCCTCATCCATGCCGCCAGTTCCCGTCGATGTTTCCCGCCTCCTCATTCCGGATGC CGCGCAGGTTTGCGCCTGGCTGACCGGGCACGCGGGTCTGAAAATGGCCGATCTGGAGCGGGCGCAACGTTTGCAGCAGG AGTCTGAAGGCACCGAGCTGCTCGGGTTGTTGACTCGTCTGGGTCTGGTTTCCGAATTTGAACTGGCCCGCGCATGGGCT GCACTGTTGCAGGCGCCGCTGTTGCTCGCTGACGCTGTGCCGCCGCTGCTCGACCCCTTGCCGCCTTTGACCGAGCGCTT CATGCGCCACTATCAAGTCGTGCCTGTAGGCTGGAGCGATCAAGGGCTGCAAGTGCTCAGCGCCAACCCCGGTACGCTGT ACCCGTTCCAGGCCATCGCTTATGCCTGCGAAGTGCCGGTGCGGCTGTCCATCGGGCCGCGCAATGAAGTCGAAACCCTT ATTGAGCGCTATTACGGGCAGGGCCGCTCGGCGATGGGCACCCTGATCGAGAACCTCGATGAGGAGGGTGGCTCGCTGGA AGACATCGAGCACCTCAAGGATCTGGCCTCCGAAGCGCCGGTCATTCGTCTGGTCAACCTGATTTTGCAACGTGCGGTCG AACAGCGTGCGTCGGACATTCATATCGAGCCGTTCGAGAGCCAGCTGAAGGTGCGCTATCGCATCGACGGCGTGTTGCAT GAGGCCGAGGCGCCACCGTCCAGTTCTTCGGCGGCGGTCATTTCCCGGGTGAAGATCATGGCGCGGCTGGACATCGCCGA GCGTCGTCTGCCGCAGGATGGCCGGATCATGCTGCGCATCCAGGGCAAGGAGCTGGACCTGCGGGTGTCTACGGTGCCTA CCAGCTTCGGCGAATCGGTGGTCATGCGTTTGCTGGACCGGCAGACCATCAATTTCGATTTCCCCAGCCTGGGTTTCGAT GGCGAACGGCTGGATGAATTTCTCGATGTGCTCGAGCGTCCACACGGCATTCTGCTGGTCACCGGGCCGACCGGCTCCGG CAAGACCACCACTCTTTATACTGCGCTATCACGGCTCAATACCGCCGAGCGCAAGATCATCACCGTCGAAGACCCGGTCG AGTATCAGCTCGAAGGCATCAATCAGATTCAGGTCAAGCCTTCCATTGGCCTGGACTTCGCCGGGGCACTGCGCTCCATC GTGCGTCAGGACCCGGATGTCATCATGATCGGTGAGATGCGTGACCTGGAAACCTGCCGTATCGCCATTCAGTCCTCGTT GACCGGTCACCTGGTGCTCTCGACGCTGCACACCAACAGTGCGGCGGCGAGTATTACCCGTCTGCTGGACATGGGCGTCG AAAGCTACCTGATCGCTTCGACGGTCAACGGCATTCTGGCCCAGCGTCTGGTCCGCCGTCTTGATCCGGCAACGCGTGAA GCCTTCGATGCGCCGCCGGAGTTGATTGCCGAGCACGGGCTGGAGCGCTTCACTGACGAACGCCCGATTCGCCTGTATCG CCCGCGTGCCGATGCACCTGGCGGCGGTTACCGGGGGCGCAGTGCAATCACCGAGTTGCTGGTCATGAACGAAGAGCTGC GCAGTCTGTTGATGCGCCACGCCGATGCGTCGACTTTGGAAGAGGCTGCCCGACGTGGCGGCTTGCGCACGCTGCATGAA GAGGGCCTGCGCCAGGCCGTGGCCGGGGTGACTTCGCTGGAAGAAGTGCTGCGCGTCACCCGAGGTGAAGGCACATGA Protein sequence : MSLRSSKMPSSMPPVPVDVSRLLIPDAAQVCAWLTGHAGLKMADLERAQRLQQESEGTELLGLLTRLGLVSEFELARAWA ALLQAPLLLADAVPPLLDPLPPLTERFMRHYQVVPVGWSDQGLQVLSANPGTLYPFQAIAYACEVPVRLSIGPRNEVETL IERYYGQGRSAMGTLIENLDEEGGSLEDIEHLKDLASEAPVIRLVNLILQRAVEQRASDIHIEPFESQLKVRYRIDGVLH EAEAPPSSSSAAVISRVKIMARLDIAERRLPQDGRIMLRIQGKELDLRVSTVPTSFGESVVMRLLDRQTINFDFPSLGFD GERLDEFLDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQVKPSIGLDFAGALRSI VRQDPDVIMIGEMRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLLDMGVESYLIASTVNGILAQRLVRRLDPATRE AFDAPPELIAEHGLERFTDERPIRLYRPRADAPGGGYRGRSAITELLVMNEELRSLLMRHADASTLEEAARRGGLRTLHE EGLRQAVAGVTSLEEVLRVTRGEGT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-91 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-91 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE1 | YP_275240.1 | general secretion pathway protein GspE | VFG0182 | Protein | 5e-91 | 50 |
| gspE1 | YP_275240.1 | general secretion pathway protein GspE | VFG2048 | Protein | 4e-92 | 45 |
| gspE1 | YP_275240.1 | general secretion pathway protein GspE | VFG1876 | Protein | 3e-85 | 44 |
| gspE1 | YP_275240.1 | general secretion pathway protein GspE | VFG0112 | Protein | 2e-85 | 41 |
| gspE1 | YP_275240.1 | general secretion pathway protein GspE | VFG1880 | Protein | 5e-82 | 41 |
