Gene Information

Name : PSPPH_3040 (PSPPH_3040)
Accession : YP_275217.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3531153 - 3531836 bp
Length : 684 bp
Strand : +
Note : identified by similarity to SP:P77380; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACCCGAATTCTGGCAATCGAAGATGATGCCATCACAGCAAAGGAAATCGTGACCGAACTCAGCAACCACGGACTGGA
AGTGGACTGGGTGGACAACGGCCGTGACGGTCTTGCACGTGCAGTGAGCGGCGACTATGACTTGATTACTCTGGACCGCA
TGCTTCCGGAGATGGATGGTCTGACCATCGTCACCCATCTGCGCGCCCAGGGTATCTCCACGCCAATCCTGATGATCAGC
GCCCTTTCCGACGTGGACGAGCGGGTGCGCGGGCTGCGTGCAGGTGGGGATGATTATCTGCCCAAACCGTTTGCTTCCGA
CGAAATGGCGGCGCGTGTCGAAGTGCTCCTGCGCCGCAGCAACCCGGTCAGCGCGGGCAAGACAGTGCTACAGGTCGCTG
ATCTGGAACTGAATCTGATCAGCCGCGAAGCCTGCCGTGGCGGTGAGCCGCTGACCCTGCTGCCCACCGAGTTCAAGCTG
CTGGAATTCCTGATGCGTAACAGCGGCCAGATCATCACCCGCATGATGATTTTCCAGGAAGTCTGGGGCTATCACTTTGA
TCCGGGCACCAACCTGATCGACGTGCATATTGGCCGTCTGCGCAAGAAGATAGACCAACCTGGCACCGCACAGCTGATCC
AGACCGTGCGAGGTTCAGGTTATGTTATTGCCGAACCCGTCTAA

Protein sequence : 
MTRILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLTIVTHLRAQGISTPILMIS
ALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKL
LEFLMRNSGQIITRMMIFQEVWGYHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0111 Protein 2e-45 46
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0125 Protein 2e-41 46
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0197 Protein 6e-43 46
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0347 Protein 1e-42 44
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0308 Protein 1e-41 44
PSPPH_3040 YP_275217.1 DNA-binding response regulator HE999704.1.gene1528. Protein 1e-28 42
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0083 Protein 1e-42 42
PSPPH_3040 YP_275217.1 DNA-binding response regulator BAC0638 Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3040 YP_275217.1 DNA-binding response regulator VFG1390 Protein 2e-40 42
PSPPH_3040 YP_275217.1 DNA-binding response regulator VFG0596 Protein 6e-34 42