Gene Information

Name : PSPPH_3008 (PSPPH_3008)
Accession : YP_275188.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3491620 - 3492411 bp
Length : 792 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAACGCCTTTCCTCATCTGGTCAACGCACCGGTGCTGGGCTGCTCCGGGCTGGGTTATTCGGTGCGTGGCACTGCGTT
GCTGCGCGACGTCGACTTGAGCATCGCAGCCGGCGAGACACTGGCCGTGGTCGGCCCTAACGGTTCGGGAAAATCCACCC
TGCTGAAACTATTGGCCGGTATTCAGAAACCGGTCTGCGGCACGGTCAGACTGGGCGGGCAACCACTTGAGGCAATGAGC
CGCAGAGACGTGGCGCGCTTGCTGGCGGTGGTCGAACAACAAGCGGAAACCAGCGATGCCGTGACGGTTCTGGATGCCGT
CGAGCTGGGCCGCACGCCGTGGCTGTCGGCACTCGAGCCGTGGAGTGCGAACGATGACGCAATCGTTCGCCAGGCGTTGC
AGGATGTGGACATGCTGCACATGCAGAAACGTGCCTGGCACACCTTGTCCGGTGGCGAGCGGCAGCGCGTGCACATCGCC
AGGGCGCTGGCGCAACGACCCAGGATCCTTCTGCTGGACGAACCGACCAATCACCTGGATATCCAGCACCAACTGACCAT
CCTCGGTCTGGTCAGGGCTTTGCCGGTAACCACTGTGATAGCCCTGCACGATCTGAATCAGGCGCTGGATTGCGACCGCG
TGGCGGTCATGGAGAAAGGCCGGCTGGTCGCACTGGGTGCGCCGGTCGAGGTGCTGCCCCCGGAACGCCTGCTGAGCACC
TTCGGCGTCGTGGCGCACTGGCTGACCGACCCTTTCGACGGCGCGAAAATCCTGCGTTTGCGCTCACACTGA

Protein sequence : 
MNAFPHLVNAPVLGCSGLGYSVRGTALLRDVDLSIAAGETLAVVGPNGSGKSTLLKLLAGIQKPVCGTVRLGGQPLEAMS
RRDVARLLAVVEQQAETSDAVTVLDAVELGRTPWLSALEPWSANDDAIVRQALQDVDMLHMQKRAWHTLSGGERQRVHIA
RALAQRPRILLLDEPTNHLDIQHQLTILGLVRALPVTTVIALHDLNQALDCDRVAVMEKGRLVALGAPVEVLPPERLLST
FGVVAHWLTDPFDGAKILRLRSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-34 42
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3008 YP_275188.1 iron ABC transporter ATP-binding protein BAC0164 Protein 5e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_3008 YP_275188.1 iron ABC transporter ATP-binding protein VFG1042 Protein 4e-33 41