|
Name : topB1 (PSPPH_2943) Accession : YP_275124.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 3414939 - 3416912 bp Length : 1974 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGGCTGTTTCTTTGCGAAAAACCCTCTCAGGCCAAAGACATTGCGGCTGCGCTCGGCGCGACCCGGCGTGGCGACGG CTGCTGGGTGGGTGCCAATGCCACCGTAACCTGGTGCATCGGCCACTTGCTGGAAACCGCCCCGCCCGACGCCTACGATG CGCGTTACAAACGCTGGGTGCTGGAAGACCTGCCCATCATTCCGGAAAAGTGGAAGATGCTCGTCAAGCCGAGAACTGCC AGCCAGTTCAAGGCAGTCAAGCGATTGCTGGGCGAAGCTCAAGAGTTGGTGATAGCCACCGATGCCGACCGCGAAGGCGA GATGATCGCCCGCGAACTGGTCGAACACTGTCGCTATCGCGGGCCGATTCAGCGTTTGTGGCTGTCGGCACTCGATGACG CCTCCATCCGCAAGGCGCTGGCAGCGCTCAAACCCGGTGCCGATACGTTCAGCCTGTATCACTCGGCACTGGGTCGATCC CGTGCCGACTGGCTGATCGGCATGAACATGAGCCGCCTGTTCACCCTGCTGGGTCGCCAGTCGGGTTATCAGGGCGTATT GCCAGTCGGGCGGGTACAAACCCCGACCCTGCGGCTGGTGGTGGACCGTGATCGCAGCATCGCCAACTTCGTACCGGCAC CCTACTGGGCCATTGACGTCAGGCTGCTGCACGACAACCAGGCTTTTATCGCCCAATGGCGCGCACCGTCCGACGCCTGC GACGATCAGGACCGCTGCCTGAATCAGCCGCTGGCGCAACAGGCTGCCGAAGCGATGCGCAGTGCGGCCAGCGCACGGCT GGTCAAGCTGCGCACCGAGCGGATTCGCGAAGTTGCCCCGCTGCCTTTCGATCTGGGCACCCTGCAGGAAATCTGCTCGA AAAAGCTCGGGCTTGGGGCGCAGGAAACCCTTGATATAGCTCAGTCGCTGTATGAAACACACAAGGTCATCACGTACCCG CGCAGCGATTGCGGTTACCTGCCGAACAGTCAGCATGGCGAAGCCGCGGGTATCATCGCAGTGCTGTGCAAGGCAGACCC GACGCTGGCCAGCCTGTCGCCACACCTTGACCCGCAACGCCGATCGCGGGCCTGGAATGACGGCAAAGTGACTGCCCACC ACGGCATCATTCCCACTGCTGCCGTGCGCGGCGTCGAGCGTCTGACCGGCAAGCCGCGAGCGGTGTACACCCTGATCAGA GCGCGCTATCTGGCGCAGTTCCTGCCCAGCCACGAATATGACCGTACCCAGGCCGACTTCGACTGCGCAGGCCATGCGCT GCGGGCGGTCGGCAAACAAATTGTCGAGCCAGGCTGGAAACGTGCCATGCCCGAGGCACTGGCACCGGCCAAGGGTCGCG AAGCACCTGCGCCGCAGCCGTTGCCGGCATTGTTTCAAGGCTGCGAGTGCACCGTCGCTGAGGTCATCCTCAAGGACCTC TGGACCCAACCGCCCAAACCTTTTACCGAAGGCGATCTGATCAAGGCCATGAAAAACGTCGCCAAACTGGTGGAAGACCC GCTGCTCAAGCAAAAGCTCAAGGACACGACCGGCATCGGTACCGAAGCCACCCGCGCCGGGATCATTCAGGGCCTGCTGG ACCGTGGCTATCTGACCAAACAGGGCAAGGCCCTGTGCGCAGCGCCCGCAGCATTCAGCCTGATCGACGCCGTCCCCCGC GCCATCGCCGACCCAGGCACTACAGCGATCTGGGAACAGGCACTCGACATGGTACAGAATGGCGAAATGAGCCTTGAAGA GTTCGTCGCCAAACAGGCAGCGTGGATGAGCAAACAGGTCAGCCGCTGCGTCGGCATGCGCATGAGCATCAGCGGCCCGG CCAGCCCGGCAGGCGTTGCGCCGCCCTGGAAGAAAAAACGCAAAATCGCCAAGCGCAGCACTGCTACGTCCTCTGCTGCA ACGGGCACTGCGACGAAAAAACCGCGACGTACAGCCAAACCGGCGGCCAGATGA Protein sequence : MRLFLCEKPSQAKDIAAALGATRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRWVLEDLPIIPEKWKMLVKPRTA SQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHDNQAFIAQWRAPSDAC DDQDRCLNQPLAQQAAEAMRSAASARLVKLRTERIREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYP RSDCGYLPNSQHGEAAGIIAVLCKADPTLASLSPHLDPQRRSRAWNDGKVTAHHGIIPTAAVRGVERLTGKPRAVYTLIR ARYLAQFLPSHEYDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREAPAPQPLPALFQGCECTVAEVILKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLTKQGKALCAAPAAFSLIDAVPR AIADPGTTAIWEQALDMVQNGEMSLEEFVAKQAAWMSKQVSRCVGMRMSISGPASPAGVAPPWKKKRKIAKRSTATSSAA TGTATKKPRRTAKPAAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 2e-179 | 62 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-141 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-140 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-140 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-140 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-140 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 1e-107 | 42 |
