Gene Information

Name : cbrD (PSPPH_2760)
Accession : YP_274949.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein CbrD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3196864 - 3197655 bp
Length : 792 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGGCGTCAATCGCAACCCACGACCTGACCCTGAGTTACCAACGGCAGGTGATCATCGACAGCCTTGATCTGCAGTTGCC
CGCGGGCGAGGTAAGCGTGCTGATCGGCAGTAACGGTTGCGGCAAAAGCACCTTGCTCAAATCCCTGGCGCGTCTGCTCA
AGCCGCAGCAGGGCACTGTGGTGCTCAACGGTGCCGATATCCACCAGAAATCCACTGCTACAGTCGCGCGCGAACTGGCG
ATTCTGCCGCAAATGCCAAGCGCCCCGGAAGGCATCAGCGTACGTCAGCTGGTGGCACTGGGCCGTTATCCCTATCAGAA
CTGGATGCAGCAGTGGTCCGTTCAGGATGAAGCCATGGTCGAACGGGCGCTGGCGCAGACCGGTATGCAGGAACTGGCCG
AGCGGCCCGTTGATGCGCTGTCAGGCGGCCAGCGTCAGCGCGCGTGGATCGCCATGACGCTGGCCCAGGATACCGACATC
GTATTGCTGGATGAGCCGACGACCTTTCTCGATCTGGCTCATCAGATCGAAGTGCTGGACTTGTTACGCGACCTCAATCG
CCAGGAAGGCAAGACCATCGTCATGGTCCTGCATGATCTGAACCTGGCTTGCCGTTATGCCGATCACATGGTCGCCGTCC
ACGAGCGCACCGCCTTTGCCCAGGGACGTCCGGCCGACATCCTTAGTGAAGCACTGGTCAAGCAGGTCTTCGGCCTCAAT
TGCCGGATCATTGCCGACCCGTTCTTTGGTACGCCGCTGTGCATTCCCTTTGGCCGGGAACTGCCGCAATGA

Protein sequence : 
MASIATHDLTLSYQRQVIIDSLDLQLPAGEVSVLIGSNGCGKSTLLKSLARLLKPQQGTVVLNGADIHQKSTATVARELA
ILPQMPSAPEGISVRQLVALGRYPYQNWMQQWSVQDEAMVERALAQTGMQELAERPVDALSGGQRQRAWIAMTLAQDTDI
VLLDEPTTFLDLAHQIEVLDLLRDLNRQEGKTIVMVLHDLNLACRYADHMVAVHERTAFAQGRPADILSEALVKQVFGLN
CRIIADPFFGTPLCIPFGRELPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-62 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-60 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-60 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-53 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-53 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-56 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-56 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 9e-56 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-56 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-50 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_274949.1 achromobactin transport ATP-binding protein CbrD BAC0164 Protein 2e-53 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_274949.1 achromobactin transport ATP-binding protein CbrD VFG0925 Protein 2e-65 49
cbrD YP_274949.1 achromobactin transport ATP-binding protein CbrD VFG1042 Protein 2e-53 46