Gene Information

Name : PSPPH_2535 (PSPPH_2535)
Accession : YP_274731.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2919216 - 2919872 bp
Length : 657 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGAACGGTTACCAGCCGAACCTGATCGAAATCATTCTGGTCGTCGCTACTATCGGTTTGATTCCTCTGGCCGTCGTGAC
GCTGACGGGATTCATGAAGATATCCGTGGTGCTGTTTCTGATCCGCAATGCGCTGGGCGTGCAGCAGACGCCGCCCAATC
TGGTGCTTTACGGCATTGCGCTGATTCTTTCGGTATACGTGACCACGCCGCTGATCGGTGACATGTACCGGGAGGTGCAA
GGCCGCGATCTGAGCCTGCAGAATGTCCAGCAACTGGAGGAACTCGGCAGCGCCTTGTGCCCGACATTACAGGCGCACCT
TTCGAAGTTCGCCAATGAAAGCGAACGCGGTTTTTTCGTCCAGGCCACTGAAACCATATGGTCGCCCGAAGCGCGAGCCG
ATCTGCGCGATGACGATCTTGTGGTGCTGATTCCGGCGTTCGTCAGCTCTGAACTGACCCGTGCCTTCGAGATCGGTTTT
CTGCTCTATATCCCGTTTCTGGTCGTCGATCTGTTGGTCTCCAATGTGCTCATGGCGATGGGCATGTCGATGGTCTCGCC
CACCTTGATTTCAATTCCGTTGAAGATTTTTCTGTTTGTGGCGCTCAGTGGCTGGTCACGACTGATGCACGGTCTGATCC
TGAGCTACGGAGGCTGA

Protein sequence : 
MNGYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIGDMYREVQ
GRDLSLQNVQQLEELGSALCPTLQAHLSKFANESERGFFVQATETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGF
LLYIPFLVVDLLVSNVLMAMGMSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSYGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-38 49
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-36 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-36 47
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-38 47
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-38 47
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-38 47
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-38 47
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-38 47
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-38 46
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-34 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-31 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-31 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-34 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-35 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-35 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-35 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-33 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-33 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-37 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_2535 YP_274731.1 type III secretion system protein VFG0044 Protein 9e-41 50
PSPPH_2535 YP_274731.1 type III secretion system protein VFG0394 Protein 9e-39 49
PSPPH_2535 YP_274731.1 type III secretion system protein VFG0188 Protein 1e-39 49