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Name : PSPPH_2520 (PSPPH_2520) Accession : YP_274716.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III secretion component Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2906979 - 2909162 bp Length : 2184 bp Strand : + Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGACCCTCATGAATGCCCTGAATCGCCTGGCGGTAACTGCGTCTAAACGCACAGATGTGATCATCGTTGCGTTCATGCT GATGGCTATTGCGATGATGATCATTCCGATGCCGACTTATCTGGTGGACGCGCTGATCGGAGTCAACATCGCCCTGAGCC TGCTGATTCTCATCGTCGCGTTCTACATCAACCACTCTGTGGAGTTTTCCGCGCTGCCGCCGCTGATCCTGCTCAGCACG CTGTTTCGTTTGTCGCTCTCGATCACCACCACTCGCCTGATTCTGCTGGACGGCAATGCTGGTCATATCGTCAAGGCGTT CGGTGATTTCGTGATTGCCGGTCAGGTCGTTGTGGGGCTGGTCGTATTTCTGATCATTACAGTTGCCCAGTTCGTGGTCA TTACCAAGGGTGCTGAACGGGTCGCCGAAGTCGCTGCGCGTTTTACCCTGGATGCGATGCCCGGCAAGCAGATGAGCATT GATAACGACTTGCGCAACGGTGACATCGACCCGTTCGAGGCCAGACGTCGTCGTTCACGCCTGGAGCGTGAAAGCCAGAT GTTCGGAGCTATGGACGGCGCCATGAAGTTCGTCAAGGGTGATGCCATTGCCGGGTTGGTGATTCTGTTCGTCAACCTGC TGGGCGGCATGATGATCGGCATGGTCCAGCGCGGTATGCCGTTCGCCGAAGCCGCGCATGTCTATTCGTTACTGACCGTC GGTGACGGGCTCATTGCGCAGATCCCGGCACTGTTGATTTCCGTAGCCGCAGGGACCGTGGTGACCCGCGTCAACAGCGA CGGCGAAGAGCGTGACCTGGTCACCGAGATTGTCAGGCAGCTGAGCGCCAGCCATCGTGCGCTGGGTCTGACTGCGCTGA TTCTGCTGGGCGTAGGCATGCTGCCGGGGTTTCCGTTGCTGGTGTTTGTCGGTCTGGCCGCCGTGCTGGGCGGCAGCGCG TTTGTGCTCTGGCGCCGGGATCGTCGTGCCGCCCGGTCACTGGTCAAGGACGAGCTGCAAGAGCATGAAACGATGGCCGA GCCCGGGGCATCCTCTGGCGCTTCCGGGGCTTCGAACGATGCCGCGGAAGATGCCTTGGAAAGCGCCGAGCGGCCACGCG ACAGCCAGGTGCTGCTGAGTATCGGAACCGGATTGGCCGAGGCCGCCCCGTTGCAGCCTCTGCGTCAGCGTATCGAAGCG TTGTGTCACGACATTCGTATCAATCTGGGTGTCGAGGTGCCGCTGCCCGAGGTTTATCTGGACCGCAGCCTGCCAGTCGA TCGTTTCCAGGTCGAGCTTGAAGGTGTACCCGTCAGTGAGGGCGAATTCAGCGGCATGGCGCTTTTGCTGCAGGACGATC CGGTGCATGCACAACTGGTTTCTGTCGAAACCTTTGAAGCGCCTTCGCCGATCGGTTCCCGTCCCGGCCGCTGGGCAGGG CGTGAGCACGCGGACCGTTTGCAGGACGCCGGTATTGGTTTTCTGTTCGCCGATGAAGTGTTGCGCGAAGTACTGGACCG TACGTTGCGCCGTTATGCCGCCGACTTTCTGGGTATTCAGGAAACCCGCCTGATGCTGGAACAGCTTGAGGGTAAGTACG GTGAGCTGATCAAGGAAGTGCTGCGCATTCTGCCGCTGCAACGTATCGCAGAGGCCTTGCGTTTGCTGGTCTCTGAAGGG GTATCGATACGCAGCCGTCGCGGCCTGCTGGAGTCGATGGTGGAGTGGGGCAGTATTGAATCTGACGCGGGCAGACTGAC CGAGCATCTGCGCGCAGGACTTGCGCGGCAGATCAGTCATCAGTATGCCGATCGCAACCGGGTGATCAGCGCCTTTGTAC TGGCACCTGCGCTCGAAGAACAACTGCGCGCCACGCTGGCTCGCCAGGAAAAGAGCCGTGATTCGCTGCCCGATGACATC GGCCGGACCGTACTCGTACAGCTGCGTCGCCTGTGCGACATGCTGCCGGAACATGATTTGACGGTGTTGCTTGTGCATTC GGAGCTGCGTCGGTGTATGCGCCGTCTCATCGTGCGCGGCGAGCTGCAACTGGCGGTTCTGTCCTTTCGTGAACTGGCCA GTGAATACAACCTTCAAGCGGTCGGCACTGTCAGCCTGACCGATGTCCTTGCACGCCCGGAATCCAGGGCCGGTGCTGTC ACTCCTCTGGCGACTGCCTCATGA Protein sequence : MTLMNALNRLAVTASKRTDVIIVAFMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALPPLILLST LFRLSLSITTTRLILLDGNAGHIVKAFGDFVIAGQVVVGLVVFLIITVAQFVVITKGAERVAEVAARFTLDAMPGKQMSI DNDLRNGDIDPFEARRRRSRLERESQMFGAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTV GDGLIAQIPALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLVFVGLAAVLGGSA FVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAAEDALESAERPRDSQVLLSIGTGLAEAAPLQPLRQRIEA LCHDIRINLGVEVPLPEVYLDRSLPVDRFQVELEGVPVSEGEFSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAG REHADRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVLRILPLQRIAEALRLLVSEG VSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYADRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDI GRTVLVQLRRLCDMLPEHDLTVLLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVSLTDVLARPESRAGAV TPLATAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 7e-96 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPPH_2520 | YP_274716.1 | type III secretion component | VFG0384 | Protein | 3e-94 | 43 |
