Gene Information

Name : gacA (PSPPH_2328)
Accession : YP_274533.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : response regulator, DNA binding component GacA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2703496 - 2704140 bp
Length : 645 bp
Strand : +
Note : identified by similarity to SP:Q52376; match to protein family HMM PF00072; match to protein family HMM PF00196

DNA sequence : 
TTGATTAAGGTGCTAGTTGTCGATGACCATGATCTTGTCCGGACAGGCATCACACGCATGCTGGCCGACATAGACGGTCT
GCAGGTTGTCGGGCAGGCTGATTCCGGCGAGGAATCACTGAAGAAGGCGCGCGAGCTCAAGCCTGACGTTGTACTCATGG
ACGTCAAGATGCCAGGCATCGGCGGCCTGGAAGCGACGCGCAAGATGCTGCGTAGCCACCCTTATATCAAGGTCGTCGCA
GTCACTGTCTGTGAAGAAGACCCGTTTCCGACCCGTTTGCTGCAGGCAGGTGCTGCCGGCTACATGACCAAGGGTGCGGG
GCTTGCCGAAATGGTCCAGGCCATTCGCCTGGTGTTTGCCGGTCAGCGTTACATCAGCCCGCAGATTGCCCAGCAATTGG
CATTAAAGTCGTTCCAACCGCAGGTCAACAATTCGCCGTTCGATCTGCTTTCCGAGCGTGAAATCCAGATTGCCCTGATG
ATCGTCGGCTGCCAGAAAGTCCAGACCATTTCGGACAAGCTGTGCCTGTCACCGAAAACCGTTAATACCTACCGATACCG
TATCTTTGAAAAGCTCTCGATCAGCAGTGATGTTGAACTGGCTTTGCTCGCTGTACGTCACGGCATGGTTGATGCCAGCG
CCTGA

Protein sequence : 
MIKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGIGGLEATRKMLRSHPYIKVVA
VTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALM
IVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMVDASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 1e-56 58
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 1e-56 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA YP_274533.1 response regulator, DNA binding component GacA VFG1889 Protein 9e-55 54