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Name : gspE2 (PSPPH_2182) Accession : YP_274396.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : general secretion pathway protein GspE Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2535279 - 2536697 bp Length : 1419 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 DNA sequence : ATGAGTGCGCTGCCTTATGCCTGGGCCAGAGCGCAACGCATTCTCTTGCGTGAGACTGACGAGGGTGTGCTGCTGATCGT CTGCGACGCTACTCCCGGCTGGGCAATCAATGAGGCCCGTCGGCAGTTCGGTCCGGCGCGTCTGGAACAGGTTGGCACGC ATCAACTGGAGGGGCTTCTGGCCGCAGCCTACGCCGATACCGGCAGCGCGGCGGCGGTGGTGGGCGCTGCAGAAAACGAC GCTGACCTGAACCGGCTGATGCAGGATATTCCGGAAATCACCGACCTGCTGGATGCTCAGGACGGTGCCCCGGTGATTCG CATGATCAATGCACTGCTGACCCAGGCGGCTCGCGACGAGGCCAGCGATATTCATATCGAACCCTACGAAAGCCATTCGG TGGTGCGCTATAGGGTCGATGGCAGCCTGCGCGATGTAGTATCGCCGCGCAAGGCGTTGCATGGCTCGCTGGTGTCACGA ATCAAGATCATGGCCCAGCTGGATATCGCCGAAAAGCGCCTGCCTCAGGATGGTCGAATCGCATTGCGGGTGGCCGGTCG GCCCATCGACATTCGCGTCTCGACCGTGCCTACCGGCCACGGTGAAAGGGTGGTAATGCGCCTGCTCGACAAACAGGCCG GTCGTCTGCGCCTCGAAACCCTGGGCATGGCCCCTGATGTGCTGACCAGACTCGACAACCTGATACGCCAGCCCCATGGC ATTGTGCTGGTCACAGGGCCCACTGGCAGTGGCAAGACCACCAGTCTCTATGCCGCGTTGGCACGGCTGGATGCCAGCAC CAGCAATATCCTGACCGTGGAGGACCCGGTGGAGTACGACCTGCCGGGTATCAGTCAGATTCAGGTCAACAGCAAAATCG ACATGACTTTCGCCCTGGCGTTGCGCGCGATTCTGCGTCAGGACCCGGACATCATCATGATCGGTGAAATCCGTGATCTG GAAACCGCCCAGATCGCGGTGCAGGCTTCACTGACCGGACATTTGGTGCTGGCCACCTTGCACACCAATGACTCGGTATC GGCGATCAACCGGCTTGTCGACATGGGCGTCGAACCCTTTCTCCTCGCGTCTTCTCTGCTTGGCGTGCTCGCGCAGCGCC TGGTACGCCGTTTGTGCCCGCAGTGCAGACAACCCGACCCGACTGCGTCAGGCTGCTGGCGCCCGCAGGGGTGTGAGCGC TGTAGCGGCACCGGTTACAGCGGCCGCACCGGCATTCACGAGCTGTTCTGTATTGATGATGAGGTGCGCAGTTTGATCCA TCAAGGTGCCGATATGCAGGCACTGATGGGGGCGGCGCGCAATGCCGGCATGGTCAGCATGCGCGAGGATGGCCAGCGCT GGGTTCGCGATGGCACCACAGCTCCGGAAGAAATCATTCGTGTGACACGGGACGCTTGA Protein sequence : MSALPYAWARAQRILLRETDEGVLLIVCDATPGWAINEARRQFGPARLEQVGTHQLEGLLAAAYADTGSAAAVVGAAEND ADLNRLMQDIPEITDLLDAQDGAPVIRMINALLTQAARDEASDIHIEPYESHSVVRYRVDGSLRDVVSPRKALHGSLVSR IKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLRLETLGMAPDVLTRLDNLIRQPHG IVLVTGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNSKIDMTFALALRAILRQDPDIIMIGEIRDL ETAQIAVQASLTGHLVLATLHTNDSVSAINRLVDMGVEPFLLASSLLGVLAQRLVRRLCPQCRQPDPTASGCWRPQGCER CSGTGYSGRTGIHELFCIDDEVRSLIHQGADMQALMGAARNAGMVSMREDGQRWVRDGTTAPEEIIRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-105 | 56 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-105 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE2 | YP_274396.1 | general secretion pathway protein GspE | VFG0182 | Protein | 3e-117 | 60 |
| gspE2 | YP_274396.1 | general secretion pathway protein GspE | VFG2048 | Protein | 3e-105 | 55 |
| gspE2 | YP_274396.1 | general secretion pathway protein GspE | VFG1876 | Protein | 1e-111 | 51 |
| gspE2 | YP_274396.1 | general secretion pathway protein GspE | VFG2426 | Protein | 2e-77 | 48 |
| gspE2 | YP_274396.1 | general secretion pathway protein GspE | VFG0233 | Protein | 1e-85 | 48 |
