|
Name : PSPPH_1505 (PSPPH_1505) Accession : YP_273759.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : ISPsy18, transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3328 EC number : - Position : 1745570 - 1746829 bp Length : 1260 bp Strand : - Note : identified by match to protein family HMM PF00872 DNA sequence : ATGCCGACCAAAAAGAAGTCCGCCAATGCAACAGCGAGGGAGTTGCCCTCGATTCCCCAAGAGCTGATCGAGCAGTTTGT TAAAGGCCCGATGAGCGCCGAAGCCATTCAAGACGCGTCCATGGCGTTCAAGAAGGCTCTGATCGAGCGTGCGCTAGGCG CCGAGCTGGGTCACCACCTTGGTTACCCTCAGGGCGCGGAGCGCCCTGAGGGGGCGACCAATCAGCGCAATGGCAAAAGC AGCAAGACGGTTCTGACCGACGACGGGCCGCTTCGCCTGGATATCCCCAGAGACCGCGATGGTAGCTTCGCCCCGATCCT GATTCCCAAGCACGAACGACGTTTTACAGGCTTCGACGACAAGATAATTGCCATGTACGCCCGGGGCATGACGGTGCGTG AGATCCGCGCTTTTCTATCTGAGCAGTATGGAACTGACGTGTCCCATGACTTCATCAGCTCAGTCACCGATGCGGTCATG GAAGAGGTGGGCGCTTGGCAGCAACGACCCTTGGAACCGATGTATCCGGTGATCTTCTTCGATGCGTTACGGGTCAAAAT CCGGGACGAGGGGTTAGTGTGCAACAAGGCTATTTATCTGGCGCTGGGGGTATTACCTGATGGCACGCGCGACATTCTGG GTATATGGATCGAGAGCACCGAGGGTGCCAAGTTTTGGATGAAGGTGTTCAACGACCTCAAGACTCGTGGCGTTGAAGAT GTTCTGATCGCCGTCACGGATGGCCTCAAAGGAATACCGGAGGCGTTGGGGGCGGTTTTTCCTGCCACGACGCTGCAAAC CTGCATCGTGCATCTGATCCGCAACAGCTTGGACTATGCCGCTTGGGATAAACGTCGGGCACTGGCCAAAGCACTCAAGC CGATCTACCAGGCGATCAATGCCGATGTGGCTGAGCAAGAGCTTAACGCCTTTGAAGCGGGCCCCTGGGGCAAGCAGTAT CCGACTGTAGTTGCTGCATGGCGTCGCGCCTGGGATCGGGTTATACCGTTTTTTGTTTTTCCGGCGGGCATTCGCAAAGT GGTTTACATGACCAATGCCATCGAGAGCATCAATGCCCAGTTACGCAAGATCATCAAGACTCGAGGGCACTTCCCGACCG ATGAGGCTGCGACGAAACTGATATGGCTTGGGTTGCGCAACATCACCGCCAACTGGGGTCATGCGGCACACGACTGGAAA GTGGCAATGAATCAATTTGCGATCCTGTACGGAGACCGATTTACCAGACCGAGCTGGTAA Protein sequence : MPTKKKSANATARELPSIPQELIEQFVKGPMSAEAIQDASMAFKKALIERALGAELGHHLGYPQGAERPEGATNQRNGKS SKTVLTDDGPLRLDIPRDRDGSFAPILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLSEQYGTDVSHDFISSVTDAVM EEVGAWQQRPLEPMYPVIFFDALRVKIRDEGLVCNKAIYLALGVLPDGTRDILGIWIESTEGAKFWMKVFNDLKTRGVED VLIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYAAWDKRRALAKALKPIYQAINADVAEQELNAFEAGPWGKQY PTVVAAWRRAWDRVIPFFVFPAGIRKVVYMTNAIESINAQLRKIIKTRGHFPTDEAATKLIWLGLRNITANWGHAAHDWK VAMNQFAILYGDRFTRPSW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnp7109-23 | YP_001800851.1 | transposase for insertion sequence | Not tested | Not named | Protein | 1e-85 | 46 |
| CDHC03_2103 | YP_005139146.1 | transposase-like protein | Not tested | Not named | Protein | 2e-84 | 45 |
| api41 | CAF28515.1 | is285 transposase | Not tested | YAPI | Protein | 2e-95 | 44 |
| tnp7109-31 | YP_001800937.1 | transposase for insertion sequence | Not tested | Not named | Protein | 6e-82 | 43 |
| CPR_0630 | YP_697957.1 | ISCpe3, transposase | Not tested | Not named | Protein | 2e-80 | 42 |
