|
Name : xerD (PSPPH_1358) Accession : YP_273616.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1573745 - 1574641 bp Length : 897 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGGCTGCCATCGACCACCCGCTGATTGACCGGTTTCTGGATGCGCTCTGGCTTGAAAAGGGGCTGTCCGATAACACCCG CGATTCCTACCGCAGCGATCTGGCGCTGTTCAATGGCTGGCTGCAGGAGCGCAACGCTGATCTGCCCAGTGCCGGACGCG AGGTCATCCTCGATCATCTTGCGTGGCGCGTTGAAAATGCCTACAAACCGCGCTCCACGGCGCGTTTCCTGTCCGGCGCA CGTGGCTTCTACCGCTACCTGCTGCGCGAAAAGCTGATTTCCGTCGATCCCACCCTGCAGATCGACATGCCTCAGTTGGG CAAGCCATTGCCCAAGTCACTCTCCGAAGCCGACGTCGAAGCGCTGCTGGCAGCACCCGACCTGAGTGAGCCCATCGGCG AGCGTGACCGTGCCATGCTTGAAGTGCTGTATGCCTGCGGTCTGCGCGTGACCGAACTGATCAGCCTGACACTGGAACAG GTCAACCTGCGCCAGGGCGTACTGCGGGTGATGGGCAAAGGCAGCAAGGAACGGCTGGTGCCCATGGGCGAAGAGGCCAT CGTCTGGGTCGAGCGCTACCTGCGCGGTGCCCGCGACGAGTTACTGGGCGGGAAACCCAGCGACGTACTGTTCCCCAGCA CCCGAGGCGACCAGATGACCCGGCAGACCTTCTGGCACCGCATAAAGCATCAGGCAACGGTTGCGGGCATCGGAAAATCC CTGTCACCGCATACCCTGCGCCACGCCTTCGCCACCCATCTGCTTAATCACGGCGCTGACTTGCGTGTGGTGCAGATGTT GCTGGGGCACAGCGATCTTTCGACGACCCAGATTTATACCCATGTGGCACGGGCGCGGTTGCAGGAATTGCATGCCAAGC ATCATCCACGCGGTTGA Protein sequence : MAAIDHPLIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNADLPSAGREVILDHLAWRVENAYKPRSTARFLSGA RGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQ VNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKS LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 5e-67 | 55 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 5e-67 | 55 |
