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Name : hrpL (PSPPH_1294) Accession : YP_273553.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Unknown Product : RNA polymerase sigma factor HrpL Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 1505662 - 1506216 bp Length : 555 bp Strand : + Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545 DNA sequence : ATGTTTCCGAACCTAGTGATCCTTGATGCACCCCAGCCACGCCAGGACTCTTCGTCTGCCGGTATCCGTCAACTGACGGC TGATCAGATACAGATGCTCAGAGCGTTCATTCAGAAGCGCGTAATGAACCCGGATGATGTCGATGACATCTTGCAATGCG TATTTCTGGAGGCCCTGCGCAACGAGCACAAGTTTCAACATGCCAGCAAGCCGCAGACCTGGTTGTGTGGTATTGCGTTG AACCTGATCCGTAATCACTTCCGCAAAATGTATCGCCAGCCCTATCAGGAAAGCTGGGAAGACGACGTTCATTCAGAGCT GGAATGGAATGGCGATATCACTCATCAGGTAGACGGGCACAGGCAATTGGCACGCGTCATCGCAGCCATTGATTGCTTGC CGTCGAACATGCAAAAGGTCCTGGAAGTGTCGCTGGAGATGGATGGCAATTATCAGGATACGGCGAACACGCTAGGCGTT CCGATTGGCACTGTGCGCTCGCGACTGTCCCGGGCACGGGTGCAATTGAAGCAGCAGATTGACCCGTTCGCCTGA Protein sequence : MFPNLVILDAPQPRQDSSSAGIRQLTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL NLIRNHFRKMYRQPYQESWEDDVHSELEWNGDITHQVDGHRQLARVIAAIDCLPSNMQKVLEVSLEMDGNYQDTANTLGV PIGTVRSRLSRARVQLKQQIDPFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpL | ABQ88350.1 | HrpL | Virulence | Hrp PAI | Protein | 2e-80 | 93 |
| hrpL | AAA17652.1 | putative alternate sigma factor | Virulence | Hrp PAI | Protein | 2e-80 | 93 |
| hrpL | NP_791231.1 | RNA polymerase sigma factor HrpL | Virulence | Hrp PAI | Protein | 1e-79 | 92 |
| hrpL | AAG33875.2 | HrpL | Virulence | Hrp PAI | Protein | 5e-79 | 91 |
| hrpL | AAT96137.1 | HrpL | Virulence | T-PAI | Protein | 1e-77 | 88 |
| hrpL | AAT96191.1 | HrpL | Virulence | T-PAI | Protein | 1e-77 | 88 |
| hrpL | AAR25629.1 | RNA polymerase sigma factor HrpL | Not tested | Not named | Protein | 2e-36 | 53 |
| hrpL | ABA47271.1 | HrpL | Virulence | S-PAI | Protein | 1e-27 | 46 |
| hrpL | AAD24681.1 | sigma factor HrpL | Virulence | Hrp PAI | Protein | 6e-24 | 45 |
| hrpL | AAT96335.1 | HrpL | Virulence | S-PAI | Protein | 1e-29 | 43 |
| hrpL | AAT96254.1 | HrpL | Virulence | S-PAI | Protein | 7e-30 | 43 |
| hrpL | AAT96295.1 | HrpL | Virulence | S-PAI | Protein | 6e-30 | 43 |
