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Name : hrcV (PSPPH_1292) Accession : YP_273551.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III secretion component protein HrcV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1502228 - 1504315 bp Length : 2088 bp Strand : - Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGAATCAAGTCATCAACTTTCTGAACATGATTGCCCTGTCGGCCATGCGCCGGTCAGAGCTGGTCGGCGCATTCTTCGT CATCGCCATTGTCTTCATGATGATCACCCCCCTGCCCACCGGGCTGGTTGATGTGTTGATCGCGGTGAACATCTGTATCT CGTGCCTGCTGATCATGCTGGCGATGCATTTGCCAAGACCGCTGGCATTCTCGACCTTTCCGGCCGTGCTGTTGCTGACC ACCATGTTTCGTCTGGCGCTGTCGATTTCCACAACACGATTGATCCTGCTCAATCAGGACGCCGGGCACATTGTCGAAGC CTTCGGCCAGTTCGTGGTGGGTGGCAACCTGGCGGTGGGCCTGGTGATCTTTCTGATCCTGACAGTGGTCAACTTTCTGG TTATCACCAAAGGTTCGGAACGGGTCGCCGAGGTCGGCGCGCGGTTCACGCTGGACGCTATGCCCGGCAAGCAGATGTCG ATCGACAGTGATCTGCGCGCCAACCTGATAACCGTTCAGGAGGCGCGCAAGCGTCGCGCCGAGCTGAACAAGGAAAGTCA GTTGTTCGGAGCCATGGACGGCGCGATGAAGTTCGTCAACGGTGATGCCATTGCCAGCCTGATCATCGTTGCCATCAACA TGATCGGCGGTATTTCCATCGGCGTGTTGCAGCACAATATGAGCGCGGGCGATGCGTTGCAGCTGTACACCGTGCTGACC ATCGGCGACGGCCTGATTGCACAGATCCCGGCGCTGCTGATCTCCGTAACCTGCGGCATGATCATCACCCGCGTACCCAA TACCGAGGCTAGCGCGGAGGCCAACATTGGCCGTGAAATCGCCGAACAGATTACCAGCCAGCCCAAGGCATGGATCATCG CCGCAGTGGCCATGCTCGGCTTCGCGGCTCTGCCGGGTATGCCCACGGGAGTATTCATCACCATCGCGATCATCTGCGGT GCCGGTGGCATGCTGCAGTTGCAACGGGCAAGACCCAAGCCCGACGAACAACGCGCCACTGCCGTCGCCCCGGAAATGAA CGGCAAGGAAGACCTGCGTACCTTCTCACCCAGCCGGCAGTTCGTCCTGCAATTTCACCCAGGCCAGGACAGCGCACAGA TCGAGGCACTGATCAGCGAAATACGTCGGCGACGCAATAGACTGGTGGTGCAATACGGTCTGACCCTGCCGTCGTTCATC ATTGAACATGCCGATCATCTTCCTCCGGACGAGTTTCGCTTCACCGTCTACGACGTACCCATGCTCAAGGCGACATTTAC CCAGTCCCATGTCGCCGTGGACGCCCGCCAACTGGGTGGTGAAAACCTCCCGGCGGCGATTCCGGGCAATACCGACCGCC AGGAAGATCAATGGGTGTGGTTGCCCGCCGAGCAGTGCGGTGAGCTGAACCCGGTCAGCGCCATGACCCTGATCGTCGAA CGCATGGAACGCGCATTGCAGTCCTGCGCGCCTCAGTTCATCGGCTTGCAGGAGACCAAAGCAATCCTCAGCTGGCTGGA ATCCGAGCAGCCGGAGCTTGCACAAGAGATACAGCGAGTGCTCACGCTGACGCGCTTCTCGGCGGTTCTGCAACGTCTCG CGTCGGAGCGCGTACCGCTCAGAGCCATACGGCTGATCGCCGAGACCCTGATCGAGCATTGCCAGCATGAACGCGATACC AACGTGCTGACCGACTACGTGCGCATCGCGCTCAAATCGCAGATCTACCACCAGTATTGCGGTGCCGAAGGCCTGCAGGT GTGGCTGCTCACGCCGGAAAGCGAGGGCTTGCTGCGCGACGGTCTGCGCCAGACACAGACCGAAACGTTCTTCGCACTGA GTAACGAGATCAGCCAGATGCTCGTGCAACAAATGAATATCGCATTTCCGGTGCGCGCGCCCGAACAGGCGGTACTGCTG GTCGCGCAGGACCTGCGCAGCCCACTGCGGACCTTGTTGAGGGAGGAGTTCTATCACGTTCCCGTACTGTCTTTCGCAGA AATCAGCAACGCGGCCAAGGTCAAGGTAATGGGTCGCTTCGACCTTGAAGACGATCTTGAGCCAATAGACAACGAGCACG CAGCTTGA Protein sequence : MNQVINFLNMIALSAMRRSELVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLT TMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMS IDSDLRANLITVQEARKRRAELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMSAGDALQLYTVLT IGDGLIAQIPALLISVTCGMIITRVPNTEASAEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICG AGGMLQLQRARPKPDEQRATAVAPEMNGKEDLRTFSPSRQFVLQFHPGQDSAQIEALISEIRRRRNRLVVQYGLTLPSFI IEHADHLPPDEFRFTVYDVPMLKATFTQSHVAVDARQLGGENLPAAIPGNTDRQEDQWVWLPAEQCGELNPVSAMTLIVE RMERALQSCAPQFIGLQETKAILSWLESEQPELAQEIQRVLTLTRFSAVLQRLASERVPLRAIRLIAETLIEHCQHERDT NVLTDYVRIALKSQIYHQYCGAEGLQVWLLTPESEGLLRDGLRQTQTETFFALSNEISQMLVQQMNIAFPVRAPEQAVLL VAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGRFDLEDDLEPIDNEHAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 95 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 95 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 93 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 92 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 90 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 89 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 74 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 66 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 63 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 2e-99 | 41 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 4e-122 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_273551.1 | type III secretion component protein HrcV | VFG0064 | Protein | 2e-131 | 43 |
| hrcV | YP_273551.1 | type III secretion component protein HrcV | VFG0384 | Protein | 3e-120 | 41 |
| hrcV | YP_273551.1 | type III secretion component protein HrcV | VFG0198 | Protein | 4e-108 | 41 |
