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Name : clpB1 (PSPPH_0129) Accession : YP_272439.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 150906 - 153509 bp Length : 2604 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : GTGAACCTGAAGTCCCTGTTCGCCAAGCTGAACGAAACGAGCCGCACTGCCACTGAAAGCGCTGCTGCGCTGTGCCTGTC GGAGAACCACTACGACGTTGAAGTCGAGCACTTGCTGCTGCAATTGCTCGACAACAACGATAACGACCTGCCGGTGATCC TGCGCCACTACGACGTAGTGCCTGATCGCCTGCAAGCACAGCTGGTCACCGCGCTGGGGACGTTCAAGAAAGGCAACACA CGGACGCCTGCGCTCTCGCCGCACATCACGCGCATGATCGAGCAGGCCTGGGTACTGGCGTCGATCGAATTCGGTCAGTC GCAGATCCGCACCGGCCACCTGATTCAGGCCTTGCTGGATGACGATGCCCTGCGCCGCGTGGTCATCGGTTCGGCGCCGG AACTGGAGAAAATCAACGCTGACGACCTGCGCCTGAATATGAGCGCGCTGGTCGAAGGCAGCCCGGAGACCAAACTGAGC AAGCCTCTGGCCAACGCCGACGCAAGCACGGGCGCAACCACCAAGGGCAACGGCAAGCCCCCTGCCCTGGACCAGTACAC CGTCAACCTGACCCAGAGCGCCCGCGATGGTCGTATCGATCCGGTACTGGGACGCGAGTTCGAAGTGCGGCAGATGGTCG ACATCCTGACCCGCCGCCGTCAGAACAACCCGATCCTGACTGGTGAAGCGGGTGTGGGTAAAACAGCCGTGGTGGAAGGT CTGGCGCTGCGCATCGTGCAGGGCGACGTGCCTTCGGTGCTCAAGGGCGTCGCCATTCACACCCTGGATCTGGGCCTGTT GCAGGCCGGTGCAGGGGTCAAAGGCGAGTTCGAAAACCGCCTCAAGTCGGTCATCGAAGAAACCAAGCGCAGCCTGCACC CGATCATTCTGTTCATCGACGAAGCCCACACGTTGATCGGCTCGGGTGGCCAGGCCGGGCAGAACGACGCAGCGAACCTG CTCAAGCCTGCCTTGGCGCGTGGCGAGCTGCGCACCATCGCCGCCACTACATGGGCAGAATACAAAAAGTATTTCGAAAA AGACGCCGCATTGGCTCGACGCTTCCAGGTCGTGAAAGTCGAAGAGCCTGACGAAGACAAGGCCATCCACATGCTTCGTG GGCTGCTGGCGAAGATGCAGGAGCATCACAAGGTCACCGTGATGGACGAAGCGCTGGTGCAGGCCGTACGCCTTTCCAAT CGCTACATCACCGGCCGCCAATTGCCGGACAAAGCCGTCAGCGTGCTGGACACCGCTTGCGCACGCGTCGCGCTGGGCCA ATCGGCGCAGCCAGGCGCGCTGGAAGACTGCAAGCGCCACATCGACAACCTGAATGCAGAAATCACCGTGCTGGAGCAGG AAACCGCCAAGGGCAGCGACCACGCTCGCCGTTTGACGGCCCTGCACGAAGAGCTGAAAGCCGAACAGGAAACCCGCGAG TCGCTGGAGCAACAGTGGAAGCGCGAGCTGGAACTGGTCGAAAAGCTTGGCGCACTCAGCGTTCCGGAAGACGGCGCGCC TGATGCTGAGCAGATCGCTGCAGTGCGTGCCGAACTGGCCAGTGTGCAGGGCGAGCAACCGCTGGTCCACGCGCTGGTAG ACGGCGGCACCATCGGTGAAGTGATTTCCGGCTGGACCGGTATCCCGCTGGGCAAGATGCTGCGCGACGAGATCGATACC GTACAAAGCCTGCCGGCGCTGTTGGGTGAACGCGTACTGGGGCAGGATCATGCGCTTGAAGAGATCGGCAAGCGCATCAA GATTTCCCGCGCGCGCATGGAAGACCCGAACAAGCCGATCGGTGTGTTCCTGCTGCTCGGCCCGAGCGGTGTCGGCAAGA CCGAAACTGCGCTGGCGCTGGCTGACACACTGTATGGCGGCGAGCGTAACGTCATCACCATCAACATGTCCGAATACCAG GAAGCCCACACAGTCTCCAGCCTCAAAGGCTCCCCGCCGGGCTACGTCGGTTATGGCGAAGGTGGCGTGCTGACCGAAGC CGTGCGCCGCAAGCCTTACAGCGTGGTGCTGCTCGACGAGGTGGAGAAAGCCCACCCGGACGTGCTCGAGCTGTTTTTCC AGGTCTTCGACAAAGGCGTGCTGGACGATGGCGAAGGTCGCGAGATCAACTTCCGCAATACCGTGATCATTCTCACCTCC AACACCGGTACTGATCGCATCATGCAGTGGTGCCTGAACACCGAGCAGAAGCCAACCCCCGATGACATCGTGGAAGGCCT GCGCGACGAGCTGAATCAGGTGTTCAAACCTGCGTTCCTCGGTCGCTTGACCATCGTGCCGTACTACCCGGTTCAAGACG CGATTCTGGAACGCATTGTCGGCCTGAAACTTGAGCGCATCCGCAAGCGTTTCGAGCGCAATCACCAGGCAGTGCTGCGT TACGACGAGGCGCTGATCAAGGCCATCGCATCGCGTTGCACGGAAGTCGACAGCGGCGCACGCAACATCGACAACATCCT GTCCAAAACCCTCATGCCGGAACTCGCCCAGCGAGTGCTGGAGCGGATGGCGCAGGACAAGCCGATTCAGAGCCTGACCA TCGATCTGGGCAGCGATGGCGACTTCGCTTACACACTGACCTGA Protein sequence : MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVVPDRLQAQLVTALGTFKKGNT RTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLIQALLDDDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLS KPLANADASTGATTKGNGKPPALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSN RYITGRQLPDKAVSVLDTACARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELKAEQETRE SLEQQWKRELELVEKLGALSVPEDGAPDAEQIAAVRAELASVQGEQPLVHALVDGGTIGEVISGWTGIPLGKMLRDEIDT VQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQ EAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIVGLKLERIRKRFERNHQAVLR YDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVLERMAQDKPIQSLTIDLGSDGDFAYTLT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-176 | 47 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-143 | 44 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-143 | 44 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB1 | YP_272439.1 | ATP-dependent Clp protease ATP-binding subunit | VFG2076 | Protein | 0.0 | 53 |
| clpB1 | YP_272439.1 | ATP-dependent Clp protease ATP-binding subunit | VFG2084 | Protein | 3e-160 | 45 |
