Gene Information

Name : hrcR (PSPPH_1285)
Accession : YP_273544.2
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1497107 - 1497754 bp
Length : 648 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGAGGGCGTAAACCCGATCATGCTGGCGCTGTTTCTTGGCTCGCTGTCACTGATCCCCTTTCTGTTGATTGTCTGCAC
CGCCTTTCTGAAAATCGCCATGACCCTGCTGATCACCCGCAACGCAATTGGCGTTCAGCAGGTGCCGCCGAACATGGCCC
TGTACGGCATCGCCCTGGCCGCAACCATGTTCGTCATGGCCCCGGTGGCGCATGAGATCCAGCAGCGGGTCCATGAACAC
CCGCTGGAACTGGGCAGCGCCGACAAGCTGCAGAGCAGTCTGAAAACAGTGATCGAGCCACTGCAACGCTTCATGACCCG
CAATACCGACCCGGATGTGGTCGCCCATCTGCTGGAAAATACCCAGCGTATGTGGCCCAAGGAAATGGCCGATCAGGCCA
ACAAAAACGACCTGTTGCTGGCGATTCCGGCCTTTGTGCTGTCGGAACTGCAGGCCGGTTTCGAGATCGGTTTTCTGATC
TATATCCCTTTCATCGTCATCGACCTGATTGTCTCCAACCTGCTACTGGCCCTGGGCATGCAGATGGTCTCGCCGATGAC
CCTGTCGTTGCCGCTCAAGCTGCTGCTGTTCGTGCTGGTGTCGGGTTGGTCCCGACTGCTCGACAGCCTCTTCTATTCGT
ATATGTGA

Protein sequence : 
MEGVNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEIQQRVHEH
PLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQANKNDLLLAIPAFVLSELQAGFEIGFLI
YIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 9e-87 99
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 9e-87 99
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-90 96
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-90 96
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-81 94
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-85 94
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-69 77
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-63 76
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-63 76
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-63 76
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-69 73
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-34 48
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-36 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-30 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-30 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-31 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-31 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-31 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-31 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-31 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-35 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-35 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-35 43
escR AAC38369.1 EscR Virulence LEE Protein 4e-34 43
escR AAK26700.1 EscR Virulence LEE Protein 4e-35 43
escR AAL57527.1 EscR Virulence LEE Protein 4e-35 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-34 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-35 43
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-35 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-35 43
escR AAC31528.1 L0049 Virulence LEE Protein 4e-35 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-30 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-30 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-30 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 43
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-33 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-32 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_273544.2 type III secretion system protein VFG0044 Protein 7e-38 48
hrcR YP_273544.2 type III secretion system protein VFG0188 Protein 4e-38 46
hrcR YP_273544.2 type III secretion system protein VFG0394 Protein 8e-37 46
hrcR YP_273544.2 type III secretion system protein VFG0715 Protein 2e-34 43
hrcR YP_273544.2 type III secretion system protein VFG0827 Protein 2e-35 43
hrcR YP_273544.2 type III secretion system protein VFG0519 Protein 8e-31 43
hrcR YP_273544.2 type III secretion system protein VFG2494 Protein 1e-20 41