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Name : hrcS (PSPPH_1284) Accession : YP_273543.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III secretion component protein HrcS Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 1496833 - 1497099 bp Length : 267 bp Strand : - Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 DNA sequence : ATGGAAGCGTTGGCGTTGTTCAAGCAAGGCATGTTTCTGGTCGTCATCCTGACCGCTCCGCCGCTGGGTGTCGCTGTGCT GGTCGGGGTGCTCACCTCGCTGCTGCAGGCACTCATGCAGATTCAGGATCAGACGCTGCCCTTCGGCATCAAGCTCGGGG CGGTCGGGCTGACCCTGGCCATGACCGGCCGCTGGATCGGCGTCGAGCTGATTCAGTTCATCAATATGGCCTTCGACCTG ATTGCACGGTCCGGGGTCAATCACTAA Protein sequence : MEALALFKQGMFLVVILTAPPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAMTGRWIGVELIQFINMAFDL IARSGVNH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcS | AAT96147.1 | HrcS | Virulence | T-PAI | Protein | 2e-28 | 97 |
| hrcS | AAT96201.1 | HrcS | Virulence | T-PAI | Protein | 2e-28 | 97 |
| hrcS | ABQ88360.1 | HrcS | Virulence | Hrp PAI | Protein | 1e-27 | 97 |
| hrpO | AAB05076.1 | HrpO | Virulence | Hrp PAI | Protein | 1e-27 | 97 |
| hrcS | AAG33885.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-27 | 96 |
| hrcS | NP_791221.1 | type III secretion protein HrcS | Virulence | Hrp PAI | Protein | 5e-27 | 96 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 68 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 68 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 68 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-17 | 66 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 1e-18 | 66 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 1e-07 | 52 |
| spaQ | AAS66866.1 | SpaQ | Not tested | SSR-2 | Protein | 2e-06 | 46 |
| escS | AAK26701.1 | EscS | Virulence | LEE | Protein | 1e-06 | 43 |
| escS | AAL57528.1 | EscS | Virulence | LEE | Protein | 1e-06 | 43 |
| escS | CAC81848.1 | EscS protein | Virulence | LEE II | Protein | 1e-06 | 43 |
| escS | YP_003223489.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-06 | 43 |
| escS | YP_003232139.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-06 | 43 |
| spaQ | YP_217808.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 3e-05 | 43 |
| spaQ | NP_457283.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 3e-05 | 43 |
| spaQ | NP_806492.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 3e-05 | 43 |
| spaQ | NP_461810.1 | needle complex export protein | Virulence | SPI-1 | Protein | 3e-05 | 43 |
| escS | CAI43888.1 | EscS protein | Virulence | LEE | Protein | 1e-06 | 42 |
| unnamed | AAL06355.1 | EscS | Virulence | LEE | Protein | 1e-06 | 42 |
| ysaS | AAS66847.1 | YsaS | Not tested | SSR-1 | Protein | 8e-04 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG0395 | Protein | 6e-07 | 53 |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG0043 | Protein | 3e-08 | 48 |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG0187 | Protein | 0.007 | 47 |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG1772 | Protein | 7e-05 | 44 |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG0550 | Protein | 9e-06 | 43 |
| hrcS | YP_273543.1 | type III secretion component protein HrcS | VFG2454 | Protein | 0.002 | 42 |
