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Name : hrcU (PSPPH_1282) Accession : YP_273541.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III secretion component protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 1494962 - 1496041 bp Length : 1080 bp Strand : - Note : identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 DNA sequence : GTGAGTGAAAAAACCGAAAAGGCTACCCCCAAACAGATACGTGACGCTCGCGAAAAAGGTCAGGTGGGACAGAGTCAGGA CCTTGGCAAACTGCTGGTACTGATGGTCGTCAGTGAAATCACCCTGGGCCTGGCCGATGACAGCGTCGACCGGTTGCAGG CCTTGCTCGCACTGTCTTTCAAAGGTATTGACCGGAGCTTCGCTGCATCCGTCGAGCTGATCGCCAGCGAAGGCCTTTCC GTGTTGCTCAGCTTCACGTTATGCAGCGTCGGCATGGCCATGTTGATGCGCCTGGTCAGCAGCTGGATGCAGATCGGCTT TCTGTTCGCGCCCAAGGCCTTGAAGCTGGACATCAACAAGATCAACCCCTTCTCGCATGCCAAGCAGATGTTTTCCGGGC AGAACATCCTCAACCTGCTGCTCAGTATCCTCAAGGCTGTTGCCATTGGCGCGACCTTGTACATGCAGGTCAAGCCCGCG CTGGGCGCTCTTATCCTGCTGGCCAACAGCGATCTGACGACGTACTGGCACGCATTGGTCGAACTCTTTCGTCATATTTT GCGCGTGATTCTGGGGTTGCTGCTGGTCGTCGCCATGGTCGACTTCGCCATGCAGAAATACTTTCACGCCAAGAAGCTGC GCATGAGCCACGAGGACATCAAAAAAGAATACAAACAGTCCGAAGGCGATCCTCATGTCAAAGGCCATCGTCGACAACTG TCCCATGAAATCCTCAACCAGGAGCCCAGCGCCGCCCCCAATCCGGTGGAGGAAGCAGACATGCTGCTGGTCAACCCGAC GCACTACGCGGTGGCGCTGTATTACCGGCCAGGCGAGACGCCTCTGCCGCTGATTCATTGCAAGGGTGAGGACGAGGAAG CGCTGGCGCTGATTGCTCGGGCCAAAAAGGCCGGTATCCCGGTGGTGCAGAGCATCTGGCTGACAAGAACGCTGTACCGC GCCAAGGTGGGCAAATACATCCCTCGCCCCACGCTGCAAGCTGTCGGGCACATCTACAAAGTGGTTCGCCAGCTGGATGA AATCACCGATGAAGTGATTCAGGTTGAGGTGGAGCTTTAA Protein sequence : MSEKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKGIDRSFAASVELIASEGLS VLLSFTLCSVGMAMLMRLVSSWMQIGFLFAPKALKLDINKINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPA LGALILLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQL SHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR AKVGKYIPRPTLQAVGHIYKVVRQLDEITDEVIQVEVEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 5e-139 | 99 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-151 | 92 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-151 | 92 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 3e-153 | 90 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 3e-153 | 90 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 8e-146 | 88 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-124 | 87 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 2e-88 | 56 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 2e-90 | 56 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 8e-91 | 56 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 4e-91 | 55 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 5e-85 | 53 |
