Gene Information

Name : hrcJ (PSPPH_1275)
Accession : YP_273534.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : type III secretion component protein HrcJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 1489437 - 1490243 bp
Length : 807 bp
Strand : +
Note : identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544

DNA sequence : 
GTGAAATTTCTGAGCGCAGGGCTGCTGTTGTTTTGCATGTTGTTGCTTGGCGGGTGCAGTGATGAAACCGATCTTTTCAC
TGGCTTGTCCGAGCAGGACTCCAACGAGGTGGTTGCACGCCTTGCGGATCAGCACATCGATGCGCGCAAGCGCCTTGAAA
AGACCGGTGTCGTGGTTACGGTCGCAACCAGCGACATGAACCGCGCCGTACGTGTGCTTAACGCTGCCGGCCTGCCACGC
CAGTCGCGCGCCAGTCTGGGCGACATCTTCAAGAAAGAAGGGGTCATCTCGACTCCTCTCGAAGAGCGTGCCCGCTACAT
CTATGCCCTGTCTCAGGAGCTTGAAGCCACGTTGTCGCAGATAGACGGTGTCATCGTGGCCAGAGTGCATGTGGTGCTGC
CGGAGCGCATCGCTCCGGGCGAGCCGGTGCAACCTGCTTCCGCGGCCGTATTCATCAAGCACTCGGCTGCGCTGGACCCG
GACAGTGTGCGTGGGCGTATTCAGCAGATGGTCGCCAGCAGCATCCCCGGCATGTCTGCGCAATCGGCAGAATCGAAGAA
ATTTTCCATCGTTTTTGTACCGGCCACCGAGTTTCAGGAAACGACGCAATGGGCCAGCTTCGGACCGTTCAAGCTCGACA
GCGAAGAGTTGCCGTTCTGGCACCTGATGCTTTGGCTGGTACCGGCCGGTGTTGTCGTATTGCTGCTGATTATTGCGCTG
CTGCTGCGCAGTGACTGGCGTGCCGCGCTGCTTCGGCGGATCGGGTTCGGCGCGCGGAGTCGCTCAACCGTACCGGCGCG
TGCCTGA

Protein sequence : 
MKFLSAGLLLFCMLLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR
QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDP
DSVRGRIQQMVASSIPGMSAQSAESKKFSIVFVPATEFQETTQWASFGPFKLDSEELPFWHLMLWLVPAGVVVLLLIIAL
LLRSDWRAALLRRIGFGARSRSTVPARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 3e-94 97
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 5e-97 95
hrcJ NP_791211.1 type III secretion protein HrcJ Virulence Hrp PAI Protein 1e-96 90
hrpC AAB00129.1 HrpC Virulence Hrp PAI Protein 1e-96 90
hrcJ AAT96157.1 HrcJ Virulence T-PAI Protein 1e-92 87
hrcJ AAT96211.1 HrcJ Virulence T-PAI Protein 1e-92 87
hrcJ AAT96279.1 HrcJ Virulence S-PAI Protein 1e-56 67
hrcJ AAT96320.1 HrcJ Virulence S-PAI Protein 1e-56 67
hrcJ AAT96359.1 HrcJ Virulence S-PAI Protein 7e-57 67
hrcJ ABA47308.1 HrcJ Virulence S-PAI Protein 1e-56 66
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 3e-54 63
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 2e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcJ YP_273534.1 type III secretion component protein HrcJ VFG0218 Protein 1e-28 43