Name : hrcJ (PSPPH_1275) Accession : YP_273534.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III secretion component protein HrcJ Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4669 EC number : - Position : 1489437 - 1490243 bp Length : 807 bp Strand : + Note : identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 DNA sequence : GTGAAATTTCTGAGCGCAGGGCTGCTGTTGTTTTGCATGTTGTTGCTTGGCGGGTGCAGTGATGAAACCGATCTTTTCAC TGGCTTGTCCGAGCAGGACTCCAACGAGGTGGTTGCACGCCTTGCGGATCAGCACATCGATGCGCGCAAGCGCCTTGAAA AGACCGGTGTCGTGGTTACGGTCGCAACCAGCGACATGAACCGCGCCGTACGTGTGCTTAACGCTGCCGGCCTGCCACGC CAGTCGCGCGCCAGTCTGGGCGACATCTTCAAGAAAGAAGGGGTCATCTCGACTCCTCTCGAAGAGCGTGCCCGCTACAT CTATGCCCTGTCTCAGGAGCTTGAAGCCACGTTGTCGCAGATAGACGGTGTCATCGTGGCCAGAGTGCATGTGGTGCTGC CGGAGCGCATCGCTCCGGGCGAGCCGGTGCAACCTGCTTCCGCGGCCGTATTCATCAAGCACTCGGCTGCGCTGGACCCG GACAGTGTGCGTGGGCGTATTCAGCAGATGGTCGCCAGCAGCATCCCCGGCATGTCTGCGCAATCGGCAGAATCGAAGAA ATTTTCCATCGTTTTTGTACCGGCCACCGAGTTTCAGGAAACGACGCAATGGGCCAGCTTCGGACCGTTCAAGCTCGACA GCGAAGAGTTGCCGTTCTGGCACCTGATGCTTTGGCTGGTACCGGCCGGTGTTGTCGTATTGCTGCTGATTATTGCGCTG CTGCTGCGCAGTGACTGGCGTGCCGCGCTGCTTCGGCGGATCGGGTTCGGCGCGCGGAGTCGCTCAACCGTACCGGCGCG TGCCTGA Protein sequence : MKFLSAGLLLFCMLLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDP DSVRGRIQQMVASSIPGMSAQSAESKKFSIVFVPATEFQETTQWASFGPFKLDSEELPFWHLMLWLVPAGVVVLLLIIAL LLRSDWRAALLRRIGFGARSRSTVPARA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
hrcJ | AAC35801.1 | putative hrp type III secretion pathway protein | Virulence | Hrp PAI | Protein | 3e-94 | 97 |
hrcJ | AAB05080.1 | HrcJ | Virulence | Hrp PAI | Protein | 5e-97 | 95 |
hrpC | AAB00129.1 | HrpC | Virulence | Hrp PAI | Protein | 1e-96 | 90 |
hrcJ | NP_791211.1 | type III secretion protein HrcJ | Virulence | Hrp PAI | Protein | 1e-96 | 90 |
hrcJ | AAT96157.1 | HrcJ | Virulence | T-PAI | Protein | 1e-92 | 87 |
hrcJ | AAT96211.1 | HrcJ | Virulence | T-PAI | Protein | 1e-92 | 87 |
hrcJ | AAT96279.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 67 |
hrcJ | AAT96320.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 67 |
hrcJ | AAT96359.1 | HrcJ | Virulence | S-PAI | Protein | 7e-57 | 67 |
hrcJ | ABA47308.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 66 |
hrcJ | AAB49174.1 | HrcJ | Virulence | Hrp PAI | Protein | 3e-54 | 63 |
lscJ | AAO18027.1 | LscJ | Virulence | TTSS locus | Protein | 2e-27 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
hrcJ | YP_273534.1 | type III secretion component protein HrcJ | VFG0218 | Protein | 1e-28 | 43 |