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Name : hrpS (PSPPH_1271) Accession : YP_273530.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type III transcriptional regulator HrpS Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 1486609 - 1487517 bp Length : 909 bp Strand : + Note : identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 DNA sequence : ATGGATCTTGATGAGGGGTTTGATGACGACCTAGACGAGGAGCGTGTTCCAAATCTGGGGATCGTCGCTGAAAGCATTTC GCAACTCGGTATCGATGTGTTGCTGTCAGGCGAGACCGGGACTGGCAAAGACACTATTGCCCAGCGCATTCACACAATAT CTGGCCGTAAAGGTCGCCTGGTTGCGATGAATTGCGCTGCGATTCCGGAGTCGCTGGCAGAGAGTGAGCTGTTTGGAGTG GTCAGCGGTGCGTACACCGGTGCTGACCGCTCCAGAGTCGGCTACATCGAAGCGGCACAAGGCGGAACGCTGTATCTGGA TGAGATCGACAGCATGCCGCTCAGCCTGCAGGCCAAGCTGCTGAGGGTGCTGGAAACCCGAGCACTGGAACGACTGGGTT CGACATCGACGATCAAGCTGGATGTCTGCGTGATCGCTTCGGCCCAGTCGTCTCTGGATGATGCCGTCGAGCAGGGGAAA TTTCGTCGGGATCTGTACTTTCGCCTTAACGTGTTGACACTCCAGCTGCCACCCTTGCGCACACAGCCTGAGCGCATTCT GCCCTTGTTCAAGCGCTTTATGGCCGCAGCTGCCAAAGAACTGAACGTCGCCTCTGCCGATGTCTGTCCGCTGCTTCAGC AGGTGCTGTTGGGGCATGAGTGGCCCGGCAATATCCGTGAGCTCAAGGCTGCTGCAAAGCGCCATGTATTGGGTTTCCCG GTGTTGGGTGTCGACCCGCAGAGTGAAGAACACTTGGCCTGTGGGCTCAAATCCCAGCTGAGGGCGATTGAAAAGGCCCT GATTCAACAGTCACTCAAGCGCCACCGTAACTGCATTGATGCGGCAAGCCTGGAGCTGGACATGCCACGCCGCACGCTCT ATCGACGTATCAAGGAGTTGCAGATCTGA Protein sequence : MDLDEGFDDDLDEERVPNLGIVAESISQLGIDVLLSGETGTGKDTIAQRIHTISGRKGRLVAMNCAAIPESLAESELFGV VSGAYTGADRSRVGYIEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTSTIKLDVCVIASAQSSLDDAVEQGK FRRDLYFRLNVLTLQLPPLRTQPERILPLFKRFMAAAAKELNVASADVCPLLQQVLLGHEWPGNIRELKAAAKRHVLGFP VLGVDPQSEEHLACGLKSQLRAIEKALIQQSLKRHRNCIDAASLELDMPRRTLYRRIKELQI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-125 | 100 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 4e-115 | 90 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 4e-115 | 90 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-115 | 89 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-111 | 87 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 2e-103 | 83 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 2e-103 | 83 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 2e-74 | 65 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 2e-74 | 65 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 4e-77 | 65 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 7e-77 | 65 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 6e-74 | 63 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-68 | 60 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-68 | 60 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 1e-70 | 58 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 1e-70 | 58 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 1e-70 | 58 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 3e-71 | 58 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 3e-64 | 54 |
