Gene Information

Name : PSPPH_1195 (PSPPH_1195)
Accession : YP_273462.1
Strain : Pseudomonas syringae 1448A
Genome accession: NC_005773
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1403490 - 1404167 bp
Length : 678 bp
Strand : -
Note : identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGCGTGCTGATTATCGAAGACGAAGAGAAAACCGCAGACTACCTGCGTCGCGGCCTGACCGAACAGGGCTACGCCGT
CGACGTGGCGCGCGATGGCATCGAAGGTCTGCACCTGGCGCTGGAGAACGACCACGCGATCATCATTCTTGATGTGATGT
TGCCCGGCCTGGACGGCTTTGGCGTGTTGCGTGCGTTGCGTGCGCGCAAGCAGACGCCCGTCATCATGCTGACCGCTCGC
GAGCAGGTCGATGACCGCATTCGCGGCCTGCGCGAAGGTGCCGATGACTATCTCGGCAAACCGTTTTCCTTTCTGGAACT
GGTCGCCCGCCTGCAGGCCCTGACCCGCCGCAGCGGCGGCCACGAACCGGTGCAGATCACCATCGCCGACCTATGGATCG
ACCTGATCAGCCGCAAGGCGACCCGCGCCGGAATGCGTCTGGACCTGACCGCCAAGGAGTTTTCGCTGCTCAGCGTGCTG
GCCAGACGCCAGGGCGACATCCTCTCCAAGACATCAATCGCCGAGATGGTCTGGGACATCAACTTCGACAGTGATACCAA
CGTGGTCGAAGTCGCGATCAAACGCTTGCGGGCCAAGCTGGACGGTCCTCACGAACACAAACTGCTGCACACCATTCGTG
GCATGGGCTACGTGCTGGAGAACCGCAGTGCGGGTTGA

Protein sequence : 
MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGFGVLRALRARKQTPVIMLTAR
EQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVL
ARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-55 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-58 58
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0083 Protein 3e-56 56
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0125 Protein 2e-61 55
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0638 Protein 4e-49 53
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0111 Protein 3e-56 52
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-53 50
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator BAC0347 Protein 8e-51 49
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 2e-32 42
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator CP000675.2.gene1535. Protein 8e-34 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_002952.2859905.p0 Protein 5e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_013450.8614421.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_007793.3914279.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_003923.1003749.p0 Protein 8e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_002745.1124361.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_009782.5559369.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_002951.3237708.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_007622.3794472.p0 Protein 5e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_002758.1121668.p0 Protein 7e-33 41
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator NC_009641.5332272.p0 Protein 7e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator VFG0596 Protein 2e-55 55
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator VFG1389 Protein 7e-40 48
PSPPH_1195 YP_273462.1 DNA-binding heavy metal response regulator VFG1386 Protein 5e-37 45