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Name : PSPPH_0104 (PSPPH_0104) Accession : YP_272415.1 Strain : Pseudomonas syringae 1448A Genome accession: NC_005773 Putative virulence/resistance : Virulence Product : type I restriction-modification system restriction subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 116979 - 119996 bp Length : 3018 bp Strand : - Note : identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851 DNA sequence : ATGGTAAGCAAGACCAACGAACAGGCGCTGGAAGCCAGCATCGAAAAATACCTGACCGGCAACTGCCTGGAAGAGCAGGC GACGATTCGCGATGGCGTGAAGGAGTTGCCCTTCGACCCCAACCACGGATACCAACTGGGCCGCGTCCAGGACTTCAATG CCCGCTACGCCGTGGATACCCGCTGCTTGTGGCGGTTCCTGCATGACAGCCAGGGCGATGAATTGGAGCGCCTCAAGCAG CGCTATGATGATTGGGATCTGCGCATCCTTGAGCGCTTTGACCGGCTGGCGAAGAAGTACGGAGTGCTACACCTGTTCAA ACGCGGCCTGGCCATCGACGATGTGCACCTCAACCTGATGTACCCCGCGCCGTTGGCCAGCAGTTCGGGGCGGGTCAAAC GCCAGTTCGCGGCGAATATCTTCAGCAGCACCCGCCAGGTGCGTTACTCCCTAAGTAATCCCCTAGAAGAGATCGATCTG GTGCTGTTTGTCAATGGATTGCCCGTTGCCACGCTGGAGCTGAAGAACCCCTGGACCGGCCAAACTGCCCGTTATCACGG GCAGAAGCAGTATCGTCAGGGTCGCGATAGCAGCCAACCGCTGCTGCAATTCGGCCGCTGCCTAGTGCATATGACGGTAG ACACCGACGAGGTCTATATGACCACCAAGCTGGCCGGTACTGCGACCTTCTTCCTGCCGTTCAACAAGGGCCACAACTAC GGTGCAGGCAACCCGCCCAACCTGGCCGGGCATAAGAGCGCCTACCTCTGGCGGGAGATTTTCAGCCGCGAAAGCGTGGC CAACATTATCCAGCACTTCGTGCGCCTGGACGGCAGCAGCAAGACGCCGCTGGCCAAGCGCACGCTGTTCTTCCCGCGTT ATCACCAACTGGATGTGGTGCGCCGCCTGGTGGCGCATGCCAGCCAGCAGGGCGTGGGCCAGCGCTACCTGATCCAGCAT TCGGCCGGCTCGGGCAAGTCGAACTCCATAACCTGGGCGGCCTATCAACTGATCGAAACATACCCGGCCTCGCTGAACGT TGCCGGGGCACGCGGCCTGGATGTGCCGCTGTTCGACTCGGTAATTGTGGTGACTGACCGGCGTCTGCTGGACAAGCAAT TACGTGAGAACCTGCGCGAATTCTCCGAGGTAAAGAACATCATCGCCCCAGCGCTGAAATCATCCGACCTCAAGCAGGCG CTGGAGCAAGGTAAGAAAATCATCATCACCACCATCCAGAAATTCCCCTGGATCGTCGATGGCATCGACGACATGGCCGG CAAGCGCTTCGCCGTGATCATCGACGAGGCGCACAGCTCGCAGGACGGTAGCAGCCACGGGACGATGAACTCGGTGATGG GAGGCGACGATCAAGACGACACTCAAGAGAAAATCCTCAGCGCGATCAAGAACAGCAAGATGCGCGGCAACGCCTCCTAC TTCGCCTTCACCGCCACGCCGAAGAACAGCACGCTGGAGAAGTTCGGCGAGCAGCAAGCCGATGGCCGCTTCGAGCCTTT CCATCTGTATTCGATGAAACAGGCAATCGAGGAAGGCTTTATCCTCGATGTGCTGGCCAACTACACCACTTACCGCAGCT ACTACGAGATTCAGAAGTCCATTGAGGACGACCCACTGTTCGACAAGCTGAAGGCGCAGAAAAAACTGCGCGCCTATGTC GAGCGTGACCAGCAGACCATCGACGTAAAGGCAGAGGTGATGCTGGACCACTTCATCGATCAGGTGGTTACGCCGAAAAA GCTCAAGGGCCAGGGCAAGGGCATGGTCATCACGCAGAACATCGAGTCAGCCATCCGTTATCACAAGGCCATCAGTCGGC TATTGGCTGCACGCGGCAACCCGTTCAAGGCGCTAATCGCCTTCTCTGGCGACAAGCTAGTTGATGGCATTGAGTACAGC GAGGCGGGAATCAACGGCTCCGCCGAAGCTGATACGCGGGACAAATTCGACACCGACGAGTACCGCCTGTTGGTGGTGGC CAACAAGTACCTTACCGGCTTCGACCAGCCCAAGCTGTGTGCCATGTATGTGGACAAGAAACTGCAGTACGTACTCGCCG TGCAGGCTCTGTCACGCCTTAACCGCGCTGCGCCGAAGTGGGGTAAGAAGACCGAGGACCTGTTCGTCCTCGACTTCTTC AACCTTGTAGAGGATATCAAGGCCTCCTTCGACCCGTTTTACACGGCCACTAGTCTGTCGCGCGCGACGGACATCAACGT GCTGCATGAGCTCAAGGATCAGTTGGACGAGCTCGGCGTCTACGAGTGGCCAGAGGTCGAAGCGTTTGCTGCGCAGTACT TCGACAATGTCGATGCCGAGCAACTGGCTGTGCTGATCGATATTGCCGTCGAGCGTTTTGAGGTAGAGCTGGAGTTGGAG GACGAGGCGAAGGTCGATTTCAAGATCAAGGCCAAGCAGTTCGTGAAGATCTACGGCCAGATGGCCTCGATCATGCCGTA CGAAATCGTGGCGTGGGAAAAGCTGTTCTGGTTCCTCAAGTTTCTGATTCCGAAACTTAAGGTCCAAGACAAAGACGCTG ACGAGATCGACGCCTTGCTCAACTCGGTAGACCTTTCGTCCTATGGGCTAGAGCGGGTCAAACTGAACCACAGCATTGCC CTGGATGACGCTGACACTGAGCTGGACCCGGCCAACCCTAACCCGCGCGGGGTACATGGTGGCGAACAGGAGAAAGACCC GCTGGATCAGATCATCCAAAGCTTCAACGAGCGCTGGTTCCAGGGCTGGGGTGTGACCACTGAGGAAAAGCGCGTGAAGT TTCTGAGCATTCTGCAGGGTATTCAGGAACATCCGGACTTCGAGCCCAAGTATCAGAAAAGTCAGGACGAAGACCACCGC GCCCTTGCATTCGAGAAAATGTTTGAGGAGGTCATGCTGATGCGGCGACGTCAAGATCTGGAGCTCTACCGCCTAGTGGC CAGCGATGCAGTGCTTAAGTCGTCATTGCAGCAGAGCATGCGGGGCATGCTGGACTAA Protein sequence : MVSKTNEQALEASIEKYLTGNCLEEQATIRDGVKELPFDPNHGYQLGRVQDFNARYAVDTRCLWRFLHDSQGDELERLKQ RYDDWDLRILERFDRLAKKYGVLHLFKRGLAIDDVHLNLMYPAPLASSSGRVKRQFAANIFSSTRQVRYSLSNPLEEIDL VLFVNGLPVATLELKNPWTGQTARYHGQKQYRQGRDSSQPLLQFGRCLVHMTVDTDEVYMTTKLAGTATFFLPFNKGHNY GAGNPPNLAGHKSAYLWREIFSRESVANIIQHFVRLDGSSKTPLAKRTLFFPRYHQLDVVRRLVAHASQQGVGQRYLIQH SAGSGKSNSITWAAYQLIETYPASLNVAGARGLDVPLFDSVIVVTDRRLLDKQLRENLREFSEVKNIIAPALKSSDLKQA LEQGKKIIITTIQKFPWIVDGIDDMAGKRFAVIIDEAHSSQDGSSHGTMNSVMGGDDQDDTQEKILSAIKNSKMRGNASY FAFTATPKNSTLEKFGEQQADGRFEPFHLYSMKQAIEEGFILDVLANYTTYRSYYEIQKSIEDDPLFDKLKAQKKLRAYV ERDQQTIDVKAEVMLDHFIDQVVTPKKLKGQGKGMVITQNIESAIRYHKAISRLLAARGNPFKALIAFSGDKLVDGIEYS EAGINGSAEADTRDKFDTDEYRLLVVANKYLTGFDQPKLCAMYVDKKLQYVLAVQALSRLNRAAPKWGKKTEDLFVLDFF NLVEDIKASFDPFYTATSLSRATDINVLHELKDQLDELGVYEWPEVEAFAAQYFDNVDAEQLAVLIDIAVERFEVELELE DEAKVDFKIKAKQFVKIYGQMASIMPYEIVAWEKLFWFLKFLIPKLKVQDKDADEIDALLNSVDLSSYGLERVKLNHSIA LDDADTELDPANPNPRGVHGGEQEKDPLDQIIQSFNERWFQGWGVTTEEKRVKFLSILQGIQEHPDFEPKYQKSQDEDHR ALAFEKMFEEVMLMRRRQDLELYRLVASDAVLKSSLQQSMRGMLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1765 | NP_231400.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 69 |
| VC0395_A1363 | YP_001217306.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 69 |
| VPI2_0013c | ACA01830.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSPPH_0104 | YP_272415.1 | type I restriction-modification system restriction subunit | VFG1098 | Protein | 0.0 | 69 |
