|
Name : lysS (MSC_0069) Accession : NP_975080.1 Strain : Mycoplasma mycoides PG1 Genome accession: NC_005364 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 78406 - 79908 bp Length : 1503 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTTAGATAATAGAAAATTTAGTGAACAAGAATTAGTCAGAAGAAATAAATATAAAACTTTAGTTGAACAAAACAAAGA TCCTTATAAAGTTACTAATTGAAAAAGAAACACTACATTATTAAAGTTAAATGAAAAATATAAAGATTATAGTAAAGAAG ATTTATTAAATTTAAATCAAGAATTAGTAGTAGTTGCTGGAAGAATTAAATTATATAGAGAGGCTGGTAAAAAAGCTGCT TTTGTTAATATTGATGACCAAGATTCAAGTATTCAATTATATGTAAGATTAGATGAAATAGGTGATCAATCTTTTGAAGA TTTTAGAAACTTCGATTTAGGAGATATTATTGGGGTTAAAGGAATCATGATGAGAACTGATCATGGCGAACTTTCAATTA GATGTAAAGAAGTTGTTTTATTATCTAAAGCTTTAAGACCACTACCTGATAAACACGCTGGAATTCAAGATATAGAAGAA AAATATCGTAGAAGATATGTTGATTTAATTGTAAATCATGACGTTAGAAAAACATTTCAAGCTCGAACTAAAATAATAAG AACTTTACAAAACTTTTTAGATAATAAAGGTTATATGGAAGTTGAAACTCCGATTTTACACTCATTAAAAGGAGGAGCTT CTGCTAAGCCTTTTATTACTCACTATAATGTTTTAAATACTGATGTTTATTTAAGAATAGCTACAGAACTACATTTAAAA CGTTTAATTGTTGGTGGTTTTGAAGGGGTTTATGAAATAGGTCGTATTTTTAGAAATGAAGGAATGAGTACTCGCCACAA TCCTGAATTTACAAGTATTGAATTATATGTTGCTTATGAAGATATGTTCTTTTTAATGAATTTAACAGAAGAAATTTTTA GAGTATGTAATGCTGCAGTTAATTCAAATTCTATAATTGAATATAATAATGTAAAAATCGATCTATCAAAACCATTTAAA AGATTACATATGGTTGATGGTATTAAACAAGTAACAGGTGTTGATTTTTGAAAAGAAATGACTGTACAACAAGCTTTAGA ATTGGCTAAAAAACATAAAGTTCATGTTGAAAAACATCAAGAATCAGTTGGACATATTATTAATTTATTTTATGAAGAAT TTGTTGAATCAACTATTGTTGAACCAACTTTTGTTTATGGTCATCCAAAAGAAATTTCTCCACTAGCAAAATCTAATCCA AGCGATCCAAGATTTACTGATAGATTTGAATTGTTTATTCTTGGAAGAGAATATGCTAATGCATTTAGTGAGTTAAACGA TCCAATTGATCAATATGAAAGATTTAAAGCTCAAATTGAAGAAGAATCTAAAGGAAATGATGAAGCCAATGATATGGATA TTGACTTTATTGAAGCCTTAGAACACGCAATGCCACCAACTGCTGGAATTGGTATAGGAATTGATAGATTAGTAATGCTT TTAACTAATTCAGAATCTATTAAAGATGTATTATTATTTCCACAAATGAAGCCAAGAGAATAA Protein sequence : MLDNRKFSEQELVRRNKYKTLVEQNKDPYKVTNWKRNTTLLKLNEKYKDYSKEDLLNLNQELVVVAGRIKLYREAGKKAA FVNIDDQDSSIQLYVRLDEIGDQSFEDFRNFDLGDIIGVKGIMMRTDHGELSIRCKEVVLLSKALRPLPDKHAGIQDIEE KYRRRYVDLIVNHDVRKTFQARTKIIRTLQNFLDNKGYMEVETPILHSLKGGASAKPFITHYNVLNTDVYLRIATELHLK RLIVGGFEGVYEIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFFLMNLTEEIFRVCNAAVNSNSIIEYNNVKIDLSKPFK RLHMVDGIKQVTGVDFWKEMTVQQALELAKKHKVHVEKHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPLAKSNP SDPRFTDRFELFILGREYANAFSELNDPIDQYERFKAQIEEESKGNDEANDMDIDFIEALEHAMPPTAGIGIGIDRLVML LTNSESIKDVLLFPQMKPRE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-100 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_975080.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-100 | 46 |
