Gene Information

Name : capM (Bd1698)
Accession : NP_968575.1
Strain : Bdellovibrio bacteriovorus HD100
Genome accession: NC_005363
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis enzyme Cap8M
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 1634762 - 1635325 bp
Length : 564 bp
Strand : -
Note : -

DNA sequence : 
ATGATCAAACGTATCTTCGACCTTGCTCTTTGTATTATTGCTTTCGCAATTTTTGGAATCCCACTGCTGCTCGTCTATGC
AGCGGTCAAATTAACCTCAAAAGGCCCCGCCCTTCACTGGTCCAAACGAGTGGGGCGTGACAATAAGATTTTCCTTATGC
CCAAATTTCGCTCCATGATGGTGGACACCCCCCAAGTAGCTACGCACCTGTTAGCAGATCCTAAAAAGTATCTGACACCC
ATTGGTGGGCTGATCCGAAAAACAAGCTTGGACGAATTGCCCCAGCTTTTATCGGTCCTTACTGGCGACATGAGCTTCGT
AGGGCCAAGACCGGCCCTATTCAATCAGGATGACTTGGTTGCCCTGCGCACCCAGTATGGAGTTGAAAAACTAAAGCCAG
GGATCACTGGATGGGCCCAAGTAAATGGACGCGATGAGCTGCCTATTCCAGTTAAAGTTGAGTTCGATAAATACTATCTG
GACAACAAATCCATTACCTTAGACATCAAAATTCTGTTCATGACAGTTCTTAAGGTAATGCGCAGTGACGGAGTTAGCCA
CTAA

Protein sequence : 
MIKRIFDLALCIIAFAIFGIPLLLVYAAVKLTSKGPALHWSKRVGRDNKIFLMPKFRSMMVDTPQVATHLLADPKKYLTP
IGGLIRKTSLDELPQLLSVLTGDMSFVGPRPALFNQDDLVALRTQYGVEKLKPGITGWAQVNGRDELPIPVKVEFDKYYL
DNKSITLDIKILFMTVLKVMRSDGVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 2e-38 52
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 4e-36 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capM NP_968575.1 capsular polysaccharide synthesis enzyme Cap8M VFG1309 Protein 7e-38 47
capM NP_968575.1 capsular polysaccharide synthesis enzyme Cap8M VFG1369 Protein 3e-30 45