Gene Information

Name : LJ0541 (LJ0541)
Accession : NP_965714.1
Strain : Lactobacillus johnsonii NCC 533
Genome accession: NC_005362
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase component
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1840291 - 1840971 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAGTAATTGAATTAAAAGATGTAAGTAAATCCTATGGTCAAGGAGAGGCCAAGGTTAATGCTCTAAAAAATATAAA
TTTTGAAGCTCAAAAAGGTGAGGTTGTCTTAATTGAAGGACCTTCTGGAGCGGGCAAGAGTACTTTTCTAACAATTGCAG
GAGCACTGCAAAAGCCTACTTCTGGTGAAGTATTTATTGGAGGAGATAACGTAACTAACTATTCTCCTAAACAAGCTGAT
GCATTACGTCTAGATAAAATTGGCTTTGTCTTACAGGCTTATAATTTAGTTCCTTATTTGACTGTTCGGGAACAGTTCAT
CTTAGTAGATAAGGTTAAAAAGACCGGCAATCTAAGTAAAGAAGCGCTTGATGGATTGCTAGATGAATTAGGAATTTCTC
AACTGGTAAATAAATATCCTAAGGAATTGTCAGGTGGGCAGCAGCAAAGAGTGGCAATTGCGAGAGCATTATATGCCGAT
CCAGCCATTATTTTAGCTGATGAACCTACTGCTTCATTAGATAGTGAAAAGGTTGAAGAAGTAGGAAAACTATTTAAGAC
TTTAGCTAAACAAAAAGAAAAGGCTATTATTCTAGTTACCCATGATTTAAGACTGAATAAGTATTCAGATAAGATTTATG
AAATGTTAGATGGACGTTTGAGCTTGAAAAAAGGTAATTAA

Protein sequence : 
MSVIELKDVSKSYGQGEAKVNALKNINFEAQKGEVVLIEGPSGAGKSTFLTIAGALQKPTSGEVFIGGDNVTNYSPKQAD
ALRLDKIGFVLQAYNLVPYLTVREQFILVDKVKKTGNLSKEALDGLLDELGISQLVNKYPKELSGGQQQRVAIARALYAD
PAIILADEPTASLDSEKVEEVGKLFKTLAKQKEKAIILVTHDLRLNKYSDKIYEMLDGRLSLKKGN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 6e-50 50
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 5e-43 48
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LJ0541 NP_965714.1 ABC transporter ATPase component CP001581.1.gene798.p Protein 7e-37 44