Gene Information

Name : znuC (PAM_093)
Accession : NP_950345.1
Strain : Onion yellows phytoplasma onion yellows
Genome accession: NC_005303
Putative virulence/resistance : Virulence
Product : ABC-type Mn/Zn transport system, ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 116807 - 117571 bp
Length : 765 bp
Strand : +
Note : identified by sequence similarity; putative

DNA sequence : 
ATGAAAAAAGAAATAGCCATTAAAATTAGAGATCTAACTGTAGCTTATCATCTAAAACCAGTTTTGTGGGATATTGATTT
AAATATTTATCAAAGCTCTTTGACAGCTATTTTGGGTCCTAATGGTGCTGGAAAATCTACTTTAATTAAAACTATTTTAG
AATTGATTCCCAAAGTTTCTGGAGAAGTTTTATTTTATAATCAAAAATATGGACAAGTAAGAAAAAAAATTTCCTACGTG
CCACAAAGAAATTCAGTTGATTGGGATTTTCCAACTACTGTGTTTGATGTTGTTTTGATGGGCCGCTACGGACATTTAGG
ATGGTTTAAAAAACCAACTGCTAAAGATAAAGAAATAGTAATGCAATCTTTGGAAAAAACAGGAATGCAAGACCTTAAGG
ACCGTCAAATATCTGAACTTTCAGGCGGACAACAACAAAGAATTTTTTTAGCTCGCGCCTTAGCTCAACAAGGAGATATT
TATTTTATGGACGAGCCTTTTCAAGGAGTTGATATCCAAACAGAAAAAAAAATTATCCAAGTTTTAAAAGATTTGCAAAA
AGAAAATAAAACCATTATTGTAGTGCACCATGATTTAGAAACAGTGACTCAATATTTTGATCATGTAGTTTTGGTAAACG
TACAAAAAATTGCAAGTGGTACTACGGATGAAGTTTTTAACCAAACTAATTTAACTAAAACTTTTCAAAATAAACAATTA
AAAAAAGATATCCATAATTTGCAAACCCCCAAAACAACTAAATAA

Protein sequence : 
MKKEIAIKIRDLTVAYHLKPVLWDIDLNIYQSSLTAILGPNGAGKSTLIKTILELIPKVSGEVLFYNQKYGQVRKKISYV
PQRNSVDWDFPTTVFDVVLMGRYGHLGWFKKPTAKDKEIVMQSLEKTGMQDLKDRQISELSGGQQQRIFLARALAQQGDI
YFMDEPFQGVDIQTEKKIIQVLKDLQKENKTIIVVHHDLETVTQYFDHVVLVNVQKIASGTTDEVFNQTNLTKTFQNKQL
KKDIHNLQTPKTTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-43 43
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-43 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-50 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-50 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-50 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-50 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-50 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuC NP_950345.1 ABC-type Mn/Zn transport system, ATPase BAC0400 Protein 4e-67 55
znuC NP_950345.1 ABC-type Mn/Zn transport system, ATPase BAC0350 Protein 7e-51 43
znuC NP_950345.1 ABC-type Mn/Zn transport system, ATPase BAC0440 Protein 2e-47 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuC NP_950345.1 ABC-type Mn/Zn transport system, ATPase VFG0526 Protein 6e-51 43