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Name : serS (PAM_083) Accession : NP_950335.1 Strain : Onion yellows phytoplasma onion yellows Genome accession: NC_005303 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 106430 - 107704 bp Length : 1275 bp Strand : + Note : identified by sequence similarity; putative DNA sequence : ATGTTAGATTTGAATTTTGTAGTCCAAAATCTGCCATCTGTTATTGCAAAATTAGAAAAAAGGCAACAAAATTTTGCTTA TTTAAATAAATTGCCTCTTTTAGCACAACAAAGAAAATCTTTACTTTTGGAAATACAGGATTTAAGAAGTCAAAAAAATC AATCAGCTAAAAAAGTTGCCCAAAAAGCTAACGCCAAAGAAGATATTACTCTTGTTTTGCAAGACACTAATTTTTTGCGT GATGATTTACAAAAACTAGAACAAAAGTTAAAACTAAAAGAACAAGAAATTTTTGATATTTTAAGCATTACCCCCAATTT ACCACACGATTCTTTACCAATTGGCACAAACGATAAGGACAATAAGGAATTGTATTGCGCAGGACAAATAAGAACTTTTG CATTTACGCCCAAAGACCATGTTTATTTAGCTGAAAAATTAGATATTCTCGACTTTAAAAGGGCTTCTAAAATTTCTGGT AGTGGATTTGTTGTTTGCAAAGGGCTAGGAGCACGCCTCGAAAGAGCCTTAATTCAATTTATGATGGATCTTCATAATAA AAAAGGTTATCAAGAAATTATTCCTCCTTATATTATCAATGAAAAATCAATGTTTGCAACAGGTCAATTACCCAAGTTTG AAGATGAAGTCTACAAGCTTTACAACTCCAAAAATAATTGGTATCTAAATCCTACAGCAGAAGTTCCTACTATTAATTTG CATCGTGAAGAAATTTTTAAACCAGACACACTTCCCATTAAATACGTCGCCTACACTACTGCTTTTCGCCAAGAAGCAGG CTCAGCTGGCAAAGATACTAGAGGAATTTTTAGACAACATCAATTTAATAAAGTAGAATTAATCCAGTTTTGCCATCCCC AAAATTCTTATGAATGTCTAGACCAAATGTTAAAAGATTCCGAAGAAGTGCTAAAACTGCTCAAACTTCCTTATCGTGTT GTTTTACTTTCTACTGGGGATTTGGGTTTTAGTATGGCAAAAACTTATGATTTAGAAGTTTTTTTACCAAGCTATAATTG TTATCGTGAAATTGGTTCTATCAGTAATTCTTGCGATTTCCAAGCAAGACGCGCCAATATTAAAATGAAAAATCCTGCAA ATAATAAAAATGAATACGTTCATATTCTAAACGGTTCAGGTTTGGCTGTTGGAAGAACTGTCATTGCTATTTTGGAAAAT TATCAAAACCAAGATGGTACTATTACAGTTCCTGAAGTTTTACAGCCTTATTTAGGAACCGATATTATCAAGTAA Protein sequence : MLDLNFVVQNLPSVIAKLEKRQQNFAYLNKLPLLAQQRKSLLLEIQDLRSQKNQSAKKVAQKANAKEDITLVLQDTNFLR DDLQKLEQKLKLKEQEIFDILSITPNLPHDSLPIGTNDKDNKELYCAGQIRTFAFTPKDHVYLAEKLDILDFKRASKISG SGFVVCKGLGARLERALIQFMMDLHNKKGYQEIIPPYIINEKSMFATGQLPKFEDEVYKLYNSKNNWYLNPTAEVPTINL HREEIFKPDTLPIKYVAYTTAFRQEAGSAGKDTRGIFRQHQFNKVELIQFCHPQNSYECLDQMLKDSEEVLKLLKLPYRV VLLSTGDLGFSMAKTYDLEVFLPSYNCYREIGSISNSCDFQARRANIKMKNPANNKNEYVHILNGSGLAVGRTVIAILEN YQNQDGTITVPEVLQPYLGTDIIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-91 | 47 |
