Name : lysU (PAM_589) Accession : NP_950841.1 Strain : Onion yellows phytoplasma onion yellows Genome accession: NC_005303 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase class II Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 663083 - 664618 bp Length : 1536 bp Strand : + Note : identified by sequence similarity; putative DNA sequence : ATGGCAACAAAATTAAGCGAACAAGAAATTATTAGACATCAAAAAATGAATGAATTAAAAAAAATAAACATCGATCCTTT TGGAAAAAAATTTGTCCCTTCTCATTCCATCGAACAAATTCTTTTGCAATACCAAAAAGCAGATAGTCTAGCTCTCGAAC AATCACAAATCCATGTTTGTGTAGCTGGCAGAATCGTTTTAAAAAGAGGACAAGGCAAAGCAGGTTTTTTGCATTTACAA GATTTTAATTTCCGAATGCAAGCATATATAAAACTGGATTTAGTGGGCAAAGATGCTTTTCAGATTTATCAAAATTGTGA TTTAGGAGATATCATAGGCATCAAAGGTTTTTTATTTAAAACCAAAACGCAAGAATTAACCATTAAAGCCTTGGAATTTA TTCATCTTACCAAAGCCCTAAAACCTTTACCTGACAAATTTCATGGCTTGCAAAACCGCGAAGAGATGAGAAAAAATCGC TATGTTGATCTAATCGTAAACGAAAAAACAAGACAAGTATTTTTAACTCGCAGTTTGATTATGAAATACATTAGAAATTT TTTTGATAATCAGGGCTTTTTAGAAGTAGAAACTCCTATTTTACAACCAACTTTGGGAGGCGCTTCTGCCAAACCTTTTA TCACTCATCACAACGCTCTTAATTGTGATTTTTACTTGAGAATTGCTACCGAATTACCCCTTAAAAAATTAATTGTTGGT GGAATGAATAAAGTCTATGAAATCGGACGTCTTTTCAGAAATGAAGGAATTGATGCCACACATAATCCCGAATTTAGCAC TATTGAGGCTTACTTGGCTTATGCTGATATGCAAGATATTATGGACTTAACAAAGCAATGCTTGCAAGAATTGGCCCAAA AATTGTTTGGCAAGTTGCAATTTACTTACCAAAACCAAGAAATTGATTTTTCCCATTTTGCAAAAGTAAGTATGGTTGCA TCAATCAAGGAAAAAACAGGAATTGATTTTACAGATAATTTTACCTTGGAACAATGCCTTTCTTTGGCAAAAAAACACCA AATTGAAGTTATGCCCCATTTTAGTCAAGGACATATCATTGAGGCTTTTTTTGGAAAATACGTAGAAAACACTCTCATTC AGCCTACTTTTGTCTACGGACATCCACTGGAAATAAGTCCTTTGGCAAAACAAAACGAAGCTGATCCTCGCTTTACTGAC CGTTTTGAACTTTTTATTGTAGGTAAGGAATTTGCTAATGCTTTTAGCGAACTTAACGACCCTATCGAACAAGAAAAACG TTTTTTAAATCAATTACAACAAAAACAATTAGGCAACGACGAAGCCAATGACATGGACTATGATTTCCTAAACGCCCTTA ATTATGGCATGCCTCCAACTGGCGGTCTTGGAATGGGACTTGATCGTTTGGTTATGCTTTTAACCGATACTGCAAATATT CGTGATGTTATTTTATTTCCACATTGTAAAAATCAAAATAAATTTAGTCAAAACAAAACAGCAAATAAAGTCCTAACGAA TAACGATAACGAATAA Protein sequence : MATKLSEQEIIRHQKMNELKKINIDPFGKKFVPSHSIEQILLQYQKADSLALEQSQIHVCVAGRIVLKRGQGKAGFLHLQ DFNFRMQAYIKLDLVGKDAFQIYQNCDLGDIIGIKGFLFKTKTQELTIKALEFIHLTKALKPLPDKFHGLQNREEMRKNR YVDLIVNEKTRQVFLTRSLIMKYIRNFFDNQGFLEVETPILQPTLGGASAKPFITHHNALNCDFYLRIATELPLKKLIVG GMNKVYEIGRLFRNEGIDATHNPEFSTIEAYLAYADMQDIMDLTKQCLQELAQKLFGKLQFTYQNQEIDFSHFAKVSMVA SIKEKTGIDFTDNFTLEQCLSLAKKHQIEVMPHFSQGHIIEAFFGKYVENTLIQPTFVYGHPLEISPLAKQNEADPRFTD RFELFIVGKEFANAFSELNDPIEQEKRFLNQLQQKQLGNDEANDMDYDFLNALNYGMPPTGGLGMGLDRLVMLLTDTANI RDVILFPHCKNQNKFSQNKTANKVLTNNDNE |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-88 | 47 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysU | NP_950841.1 | lysyl-tRNA synthetase class II | VFG1668 | Protein | 4e-88 | 47 |