Gene Information

Name : lysU (PAM_589)
Accession : NP_950841.1
Strain : Onion yellows phytoplasma onion yellows
Genome accession: NC_005303
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase class II
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 663083 - 664618 bp
Length : 1536 bp
Strand : +
Note : identified by sequence similarity; putative

DNA sequence :
ATGGCAACAAAATTAAGCGAACAAGAAATTATTAGACATCAAAAAATGAATGAATTAAAAAAAATAAACATCGATCCTTT
TGGAAAAAAATTTGTCCCTTCTCATTCCATCGAACAAATTCTTTTGCAATACCAAAAAGCAGATAGTCTAGCTCTCGAAC
AATCACAAATCCATGTTTGTGTAGCTGGCAGAATCGTTTTAAAAAGAGGACAAGGCAAAGCAGGTTTTTTGCATTTACAA
GATTTTAATTTCCGAATGCAAGCATATATAAAACTGGATTTAGTGGGCAAAGATGCTTTTCAGATTTATCAAAATTGTGA
TTTAGGAGATATCATAGGCATCAAAGGTTTTTTATTTAAAACCAAAACGCAAGAATTAACCATTAAAGCCTTGGAATTTA
TTCATCTTACCAAAGCCCTAAAACCTTTACCTGACAAATTTCATGGCTTGCAAAACCGCGAAGAGATGAGAAAAAATCGC
TATGTTGATCTAATCGTAAACGAAAAAACAAGACAAGTATTTTTAACTCGCAGTTTGATTATGAAATACATTAGAAATTT
TTTTGATAATCAGGGCTTTTTAGAAGTAGAAACTCCTATTTTACAACCAACTTTGGGAGGCGCTTCTGCCAAACCTTTTA
TCACTCATCACAACGCTCTTAATTGTGATTTTTACTTGAGAATTGCTACCGAATTACCCCTTAAAAAATTAATTGTTGGT
GGAATGAATAAAGTCTATGAAATCGGACGTCTTTTCAGAAATGAAGGAATTGATGCCACACATAATCCCGAATTTAGCAC
TATTGAGGCTTACTTGGCTTATGCTGATATGCAAGATATTATGGACTTAACAAAGCAATGCTTGCAAGAATTGGCCCAAA
AATTGTTTGGCAAGTTGCAATTTACTTACCAAAACCAAGAAATTGATTTTTCCCATTTTGCAAAAGTAAGTATGGTTGCA
TCAATCAAGGAAAAAACAGGAATTGATTTTACAGATAATTTTACCTTGGAACAATGCCTTTCTTTGGCAAAAAAACACCA
AATTGAAGTTATGCCCCATTTTAGTCAAGGACATATCATTGAGGCTTTTTTTGGAAAATACGTAGAAAACACTCTCATTC
AGCCTACTTTTGTCTACGGACATCCACTGGAAATAAGTCCTTTGGCAAAACAAAACGAAGCTGATCCTCGCTTTACTGAC
CGTTTTGAACTTTTTATTGTAGGTAAGGAATTTGCTAATGCTTTTAGCGAACTTAACGACCCTATCGAACAAGAAAAACG
TTTTTTAAATCAATTACAACAAAAACAATTAGGCAACGACGAAGCCAATGACATGGACTATGATTTCCTAAACGCCCTTA
ATTATGGCATGCCTCCAACTGGCGGTCTTGGAATGGGACTTGATCGTTTGGTTATGCTTTTAACCGATACTGCAAATATT
CGTGATGTTATTTTATTTCCACATTGTAAAAATCAAAATAAATTTAGTCAAAACAAAACAGCAAATAAAGTCCTAACGAA
TAACGATAACGAATAA

Protein sequence :
MATKLSEQEIIRHQKMNELKKINIDPFGKKFVPSHSIEQILLQYQKADSLALEQSQIHVCVAGRIVLKRGQGKAGFLHLQ
DFNFRMQAYIKLDLVGKDAFQIYQNCDLGDIIGIKGFLFKTKTQELTIKALEFIHLTKALKPLPDKFHGLQNREEMRKNR
YVDLIVNEKTRQVFLTRSLIMKYIRNFFDNQGFLEVETPILQPTLGGASAKPFITHHNALNCDFYLRIATELPLKKLIVG
GMNKVYEIGRLFRNEGIDATHNPEFSTIEAYLAYADMQDIMDLTKQCLQELAQKLFGKLQFTYQNQEIDFSHFAKVSMVA
SIKEKTGIDFTDNFTLEQCLSLAKKHQIEVMPHFSQGHIIEAFFGKYVENTLIQPTFVYGHPLEISPLAKQNEADPRFTD
RFELFIVGKEFANAFSELNDPIEQEKRFLNQLQQKQLGNDEANDMDYDFLNALNYGMPPTGGLGMGLDRLVMLLTDTANI
RDVILFPHCKNQNKFSQNKTANKVLTNNDNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 8e-88 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysU NP_950841.1 lysyl-tRNA synthetase class II VFG1668 Protein 4e-88 47