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Name : clpB (RPA4433) Accession : NP_949769.1 Strain : Rhodopseudomonas palustris CGA009 Genome accession: NC_005296 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding subunit B Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 5002756 - 5005395 bp Length : 2640 bp Strand : - Note : observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished DNA sequence : ATGAACGTTGAAAAATATACCGAACGTGTGCGCGGCTTCATCCAGTCAGCGCAATCGCTGGCGATGCGCGAGGGCCATCA GCAGTTCTCGCCGCTGCACATTCTGAAAGTTCTGCTCGACGATTCCGAAGGGCTCGCGGGTGGTCTGATCGACCGCGCCG GCGGCAATTCGCGTGCGATCCTGAAGGCGACCGAGGAGGCGCTCGGCAAGATGCCGAAGGTGTCCGGCTCGGGCGCCGGC CAAGTCTATCTGGCCCCGGCGACCGCCCGGGCGTTCGACGCTGCCGAGAAGGCGGCCGAAAAGGCGGGCGACAGCTTCGT CACCGTCGAGCGGCTGCTTCTCGCGCTGTCGCTCGATAAGGACAGCGAGGCCGGTCAGCTGCTCACCAAGGGCGGCGTCA CCCCGCAGAACCTCAATGCCGCCATCAACGCCCTGCGCAAGGGCCGTACCGCGGATTCGGCGACGGCCGAGAACGCCTAT GACGCGCTGAAGAAATACGCCCGCGACCTCACCCAGGCGGCACGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGACGA GGAAATTCGCCGCACCATCCAGGTTCTGTCGCGGCGCACCAAGAACAACCCGGTGCTGATCGGCGAACCCGGCGTCGGTA AGACCGCGATCGTCGAAGGCTTGGCGCTGCGCATTCTCAACGGCGACGTGCCCGAGAGCCTGAAGGACAAGAAGCTGCTG GCGCTCGACATGGGCGCGCTGATTGCGGGTGCGAAGTATCGCGGCGAGTTCGAAGAGCGGCTGAAGGCCGTGCTCAACGA GGTCACCGCGGCCGAGGGCGGCATCATCCTGTTCATCGACGAGATGCACACCCTGGTCGGCGCCGGCAAGGCGGACGGCG CGATGGACGCGTCGAATCTGCTCAAGCCCGCGCTTGCCCGTGGCGAGCTGCACTGCATCGGCGCGACCACGCTCGATGAA TATCGCAAGCACGTCGAGAAGGACGCCGCACTGGCGCGGCGCTTCCAGCCGGTGTTCGTGTCCGAGCCGACGGTCGAGGA CACCGTCTCGATCCTGCGCGGCCTGAAGGACAAATACGAGCAGCACCACGGCGTGCGCATCGCCGACTCGGCGCTGGTGG CGGCCGTCACGCTTTCCAACCGCTACATCACCGACCGCTTCCTCCCCGACAAGGCGATCGACCTGATGGACGAGGCCGCG GCGCGGCTGAAGATGCAGGTCGACTCCAAGCCCGAAGAACTCGACTCGATGGACCGCGAGATCGTGCGGCTGAAGATCGA GCAGGAGGCGTTGAAGAAGGAAACCGATCCGGGCTCGAAGGCGCGCCTGGTGACGCTGGAGAAGGAGCTTGCCGATCTCG AAGAGAAGTCGGCGGCGTTGACCCAGCGTTGGAGTGCCGAGAAGAACAAGCTGTCGGATGCCCAGAAGCTGAAGAGCGAA CTCGACGCTCTGCGGATTGAACTCGCCAACGCGCAGCGCCGCGGTGAGTATCAGCGCGCGGGCGAGCTCGCCTATGGCCG GATTCCGGAGCTTGAGAAGAAGATCGCTGAGATCGAAGCCAACGAGAACTCGGGCGCGATGGTGGAGGAGGCGGTCACCG CCAATCACATCGCCCAGGTGGTGTCGCGCTGGACCGGCGTGCCGGTCGACAAGATGCTCGAAGGCGAGAAGGAAAAGCTG CTGCGGATGGAAGAGCAGCTCGGCCAGCGCGTGGTCGGGCAGTTCGAAGCCGTGCATGCGGTCTCGACCGCGGTCCGCCG TGCTCGCGCCGGCCTGCAGGACCCGAACCGTCCGATGGGCTCGTTCATGTTCTTAGGCCCCACCGGCGTCGGCAAGACCG AGCTGACCAAGGCGCTCGCCGAGTATCTGTTCGACGACGAGACCGCGATGGTCCGCATCGACATGTCGGAGTTCATGGAG AAGCACTCCGTGGCCCGGCTGATCGGCGCACCTCCCGGCTATGTCGGCTACGACGAAGGCGGTGTGCTGACCGAAGCGGT GCGGCGCCGGCCCTACCAGGTGATCCTGTTCGACGAGATCGAGAAGGCGCATCCGGACGTGTTCAACGTGCTGCTGCAGG TGCTCGATGACGGCCGCCTGACCGATGGTCAGGGCCGCACCGTGGACTTCCGCAACACGCTGATCGTGATGACCTCGAAC CTCGGCTCGGAGTATCTGGTCAACCAGCCCGAGGGCGAGGACACCGGCGCGGTGCGCGAGCAGGTGATGGGGATGGTGCG GGCGCACTTCCGCCCCGAATTCCTCAACCGCGTCGACGAGATCATCCTGTTCCACCGCTTGCAGAAGAGCGAGATGGGGC GGATCGTCGACATCCAGTTCGCGCGGCTCACCAAGCTGCTCGAGGACCGCAAGATCGTGCTCGATCTCGATGCTGCGGCC CGCGACTGGCTCGCCGAGAAGGGCTGGGATCCGGCTTACGGCGCCCGTCCGCTGAAGCGGGTGATCCAGCGCAGCGTCCA GGACCCGCTCGCCGAGATGATCCTGGAAGGCTCTGTCAAGGATGGCGACCACGTCGCGATCTCGGCCGAGGGCGGCGTGC TGACCTTCAACGGCAAGCCGCCGCACACCGCCGAGGTCGAGCCGTTCACGGGCCGTCCGCCGAAGCGGATGCTGAACTGA Protein sequence : MNVEKYTERVRGFIQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGNSRAILKATEEALGKMPKVSGSGAG QVYLAPATARAFDAAEKAAEKAGDSFVTVERLLLALSLDKDSEAGQLLTKGGVTPQNLNAAINALRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL ALDMGALIAGAKYRGEFEERLKAVLNEVTAAEGGIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDE YRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKDKYEQHHGVRIADSALVAAVTLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSMDREIVRLKIEQEALKKETDPGSKARLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE LDALRIELANAQRRGEYQRAGELAYGRIPELEKKIAEIEANENSGAMVEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKL LRMEEQLGQRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVRIDMSEFME KHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN LGSEYLVNQPEGEDTGAVREQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAA RDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKDGDHVAISAEGGVLTFNGKPPHTAEVEPFTGRPPKRMLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-112 | 44 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-110 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-110 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_949769.1 | endopeptidase Clp ATP-binding subunit B | VFG0079 | Protein | 3e-177 | 48 |
| clpB | NP_949769.1 | endopeptidase Clp ATP-binding subunit B | VFG2076 | Protein | 4e-124 | 45 |
| clpB | NP_949769.1 | endopeptidase Clp ATP-binding subunit B | VFG2084 | Protein | 7e-117 | 43 |
