Gene Information

Name : fliQ (RPA3885)
Accession : NP_949222.1
Strain : Rhodopseudomonas palustris CGA009
Genome accession: NC_005296
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 4386597 - 4386860 bp
Length : 264 bp
Strand : -
Note : FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum

DNA sequence :
ATGACCGGCCCCGAAACTCTCGACGTCGCCCGCGACGCGATCTGGACCATCGTCGTGGTATCGGCGCCGCTGATGGTGGT
AGGCCTGGTGGTCGGCGTCGCGGTGTCGCTGGTCCAGGCGCTGACCCAGATCCAGGAACAGACGCTGGTGTTCGTGCCGA
AAATCCTGGCGATGTTCGTCACGCTGGTGCTGGCGCTCCCCTTCATGGCCGACGCGCTGCACTCGCAGATGATGCGGATC
TCATCGCGAATCATCGGCGGTTGA

Protein sequence :
MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFVTLVLALPFMADALHSQMMRI
SSRIIGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 7.0 50
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 7.0 50
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 7.0 50
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 1.5 46
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.070 41
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 0.040 41
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.070 41
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.057 41
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.057 41
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 7.5 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ NP_949222.1 flagellar biosynthesis protein FliQ VFG0395 Protein 2e-04 45
fliQ NP_949222.1 flagellar biosynthesis protein FliQ VFG0520 Protein 0.016 41