Gene Information

Name : RPA3094 (RPA3094)
Accession : NP_948433.1
Strain : Rhodopseudomonas palustris CGA009
Genome accession: NC_005296
Putative virulence/resistance : Resistance
Product : major facilitator transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 3500339 - 3501625 bp
Length : 1287 bp
Strand : -
Note : -

DNA sequence :
ATGACCGAGGAAGCCGCAGCGCAGCAGACGCCGGTGCCCGGCATGACCGGGCCGCGCCGCGCCGCCGTCGGCTTCATCTT
CATCACCATCGCACTCGATATGCTCAGCCTCGGCATGATCCTGCCGATCCTGCCGAAGCTGATCGAGAGTTTCTCCGACG
ACAACACCGCTAACGCGGCGCGGATCTACGGGCTGTTCGGCACCGCCTGGGCTCTGATGCAGCTGTTCGCCTCGCCGATC
CTCGGCGGGCTGTCGGACCGGTTCGGGCGGCGCCCGGTGATCCTGCTGTCCAATCTGGGGCTCGGCCTCGACTACGTCCT
GATGGCGCTGGCGCCGTCGCTGTGGTGGCTGTTTGTCGGCCGGGTGATCTCGGGTATCACCTCGGCGAGCATCTCGACCT
CGTTCGCCTATATCGCCGACGTCACGCCCGCGGAGAAACGTGCGGCGGTGTTCGGCATGGTCGGCGCAGCGTTCGGACTC
GGCTTCACCTTTGGGCCGGCGATCGGCGGTCTGCTCGGCGGTGTGGATCCGCGGTTGCCGTTCTGGGTGGCTGCGGCGCT
GAGCCTGGCGAATACGCTGTACGGCCTGTTCGTATTGCCGGAGTCGCTACCGCGAGACCGACGCTCGCCGTTCCGCTGGA
AGTCCGCCAATCCGATCGGGGCGGTGCGGCTGCTGAGTTCGAACGCGCGATTGGCTGCGCTTGCGGTGGTCGAGTTCTGT
GCCGAGGTGGCGCACGTCGCGCTGCCGGCAACCTTCGTGCTCTACACCGGCTATCGCTATGCCTGGGATCAGACCACGAT
CGGGCTGGCGCTGGCGTTCGTCGGTGTCTGCACCACCATCGTGCAGGGCGGGTTGGTCGGCCCCGCGGTGAAGCTGCTCG
GCGAGCGCAACGCGCAGATCATCGGCTATGGCGGCGGTGCGCTCGGCTTTCTGATCTATGCGCTGGCGCCGAGCGGCACG
CTGTTCTGGATCGGCATTCCGGTGATGACGCTGTGGGGCATCGCCGGGCCGGCAACCTCGGGGATGATGACCCGGCTGGT
CTCGCCGTCGCAGCAGGGCCAGTTGCAAGGCGCCACCACCAGCGTCAAGAGCGTCGCCGAACTGATCGGCCCGTTCCTGT
TCACGATGATCTTCGCGTACTTCATCGATGCCGGCGCACCGCTGCAGCTGCCTGGGGCGCCGTTCCTGCTCGCCGGTGCG
CTTCTGGTCGTGTCCGTCGTGATCGTCGCCTTCGCATCGCCTGCCGCCGACAGCAAACAGGCGCCGCAAGCGGCGCCTGA
AAGCTGA

Protein sequence :
MTEEAAAQQTPVPGMTGPRRAAVGFIFITIALDMLSLGMILPILPKLIESFSDDNTANAARIYGLFGTAWALMQLFASPI
LGGLSDRFGRRPVILLSNLGLGLDYVLMALAPSLWWLFVGRVISGITSASISTSFAYIADVTPAEKRAAVFGMVGAAFGL
GFTFGPAIGGLLGGVDPRLPFWVAAALSLANTLYGLFVLPESLPRDRRSPFRWKSANPIGAVRLLSSNARLAALAVVEFC
AEVAHVALPATFVLYTGYRYAWDQTTIGLALAFVGVCTTIVQGGLVGPAVKLLGERNAQIIGYGGGALGFLIYALAPSGT
LFWIGIPVMTLWGIAGPATSGMMTRLVSPSQQGQLQGATTSVKSVAELIGPFLFTMIFAYFIDAGAPLQLPGAPFLLAGA
LLVVSVVIVAFASPAADSKQAPQAAPES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 9e-35 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 9e-35 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 1e-34 42
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 9e-35 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 6e-35 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 8e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPA3094 NP_948433.1 major facilitator transporter NC_011586.7045189.p0 Protein 1e-31 42
RPA3094 NP_948433.1 major facilitator transporter AF090987.gene.p01 Protein 2e-26 42
RPA3094 NP_948433.1 major facilitator transporter AF534183.gene.p01 Protein 4e-35 42
RPA3094 NP_948433.1 major facilitator transporter NC_010410.6002597.p0 Protein 4e-35 42
RPA3094 NP_948433.1 major facilitator transporter CP001485.1.gene2821. Protein 4e-35 42
RPA3094 NP_948433.1 major facilitator transporter X75761.gene.p01 Protein 3e-34 41