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Name : kdpB (RPA3003) Accession : NP_948344.1 Strain : Rhodopseudomonas palustris CGA009 Genome accession: NC_005296 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : - Position : 3399950 - 3402079 bp Length : 2130 bp Strand : - Note : One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions DNA sequence : GTGACTGCGATGGATGCGGTTCAAATCAAGACACGCGGCAAGTCGTCGACCTTGCTCGATCCGAAGATCGTGTTGCCGGC GATCGGCACGTCGTTCGCCAAGCTCGATCCTCGGGTGATGATCAAAAACCCGGTGATGTTCGTGGTGGAAGTGGTCGCTG CGCTGACCACGGTACTGTTCGTGCGCGACCTCGTCACCGGCAGCGCGGATCTGTGGTTCACCGGGCAGATCATCCTGTGG CTGTGGTTCACGGTACTGTTCGCCAACTTCGCGGAGGCGGTCGCCGAAGGGCGCGGCAAGGCGCAGGCCAATACGCTACG CGAGACCCGCGTCGGCACTGTCGCCAAGCGGCTGCTGATGCCGGGCAACACCGAGCTGTATGAAGGCGTCGCGGCCGAGC ACCTTTCTGTCGGCGATCTGGTCCTGGTCGAAGCCGGAGACGTGATCCCTGGCGACGGCGAGGTGGTGGAAGGCGTGGCC TCGGTCAACGAGGCGGCCATCACCGGCGAGTCCGCGCCGGTGATCCGCGAGTCCGGCGGCGACCGATCGGCGGTGACCGG CGGCACCACGGTGATTTCCGATCGCATTGTGGTGCGGATCACCGCGGAAGTCGGCCATTCGTTCCTCGACCGCATGATCA AGCTGGTCGAAGGCGCGGAACGGCAGAAGACCCCGAATGAGATCGCGCTGAACATTCTGCTCGCCGGCCTCACCATCATC TTCGTGTTCGCCACCGTGACGATCCCGAGCTTTGCTGCTTATGCGGGCGGGCAGATCTCCGTGGTGATCCTGGTGGCGCT GTTCGTCACGCTGATCCCGACCACGATCGGTGCGTTGCTGTCGGCGATCGGCATCGCCGGCATGGACCGGCTGGTACGCT TCAACGTGCTGGCGATGTCGGGCCGTGCCGTCGAGGCCGCCGGTGACGTCGACACGCTGCTGCTCGACAAAACCGGCACC ATCACGCTCGGCAATCGCCAGGCGACCGCGTTCCGTCCGGTGCGGGGCGTCAGCGAGCGCGATCTTGCCGATGCTGCGCA GATGGCGTCTCTTGCCGACGAAACGCCGGAAGGCCGGTCGATCGTGGTGCTGGCTAAGGAGAAGCACGGCATCCGCGGTC GTGATCTGGCCGAGCTCGGCGCTCACTTCATTCCGTTCACCGCGCAGACCCGGATGAGCGGCGTCGACATCGGCGGATCG TCGATCCGCAAGGGCGCGGTCGACTCGATCCTGGCCTCTGTCTCGGCCGTCCCCGGCGTAGCTTCGATCCAGGGCAACGT CGCGCGCGCGATCGAGGGGGCCGCGAACGTGGAGGGCGCTCGCGAACTGGTGGCGATCGCCGACGAGATTGCCAAGGCGG GTGGTACGCCGCTTGCGGTGGCCCGCGATGGCAAGCTGCTCGGCGTGATCCAGCTCAAGGACATCGTCAAGGGCGGCATC CGCGAGCGCTTCGCCGAACTGCGACGGATGGGCATCCGCACGGTGATGATCACCGGCGACAATCCGATGACCGCGGCGGC GATCGCTGCTGAAGCCGGCGTCGACGATTTCCTCGCTCAGGCGACACCGGAAGACAAGCTCAGGCTGATCCGCGACGAGC AGGCGAAGGGCAAGCTTGTGGCGATGTGCGGCGACGGCACCAACGACGCCCCGGCGCTGGCACAGGCTGATGTTGGTGTG GCGATGAATTCCGGCACCCAGGCAGCGCGCGAGGCCGGCAACATGGTCGACCTCGACTCCAATCCGACCAAGCTGATCGA GGTTGTCGAGATCGGCAAACAGCTGCTGATGACGCGCGGCGCGCTGACCACATTCTCGATCGCCAACGACGTCGCCAAGT ATTTCGCCATTATCCCGGCGATGTTCCTGGCGTTCTATCCGCAGCTCGGCGTGTTGAACGTCATGCACCTCGCCAGCCCG CAGAGCGCGATCCTGTCGGCGATCATCTTCAACGCGCTGATCATCATCGCGCTGATCCCGCTGGCGCTGAAGGGCGTCTC GTATCGGCCGGTCGGAGCCGCGGCGCTGCTGCGGCGGAATCTGCTGGTCTACGGCCTCGGCGGCATCCTGGTGCCCTTCA TCGGCATCAAGGTGATCGACCTTGCTGTCTCGGCCCTGCATTTGGTGTGA Protein sequence : MTAMDAVQIKTRGKSSTLLDPKIVLPAIGTSFAKLDPRVMIKNPVMFVVEVVAALTTVLFVRDLVTGSADLWFTGQIILW LWFTVLFANFAEAVAEGRGKAQANTLRETRVGTVAKRLLMPGNTELYEGVAAEHLSVGDLVLVEAGDVIPGDGEVVEGVA SVNEAAITGESAPVIRESGGDRSAVTGGTTVISDRIVVRITAEVGHSFLDRMIKLVEGAERQKTPNEIALNILLAGLTII FVFATVTIPSFAAYAGGQISVVILVALFVTLIPTTIGALLSAIGIAGMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGT ITLGNRQATAFRPVRGVSERDLADAAQMASLADETPEGRSIVVLAKEKHGIRGRDLAELGAHFIPFTAQTRMSGVDIGGS SIRKGAVDSILASVSAVPGVASIQGNVARAIEGAANVEGARELVAIADEIAKAGGTPLAVARDGKLLGVIQLKDIVKGGI RERFAELRRMGIRTVMITGDNPMTAAAIAAEAGVDDFLAQATPEDKLRLIRDEQAKGKLVAMCGDGTNDAPALAQADVGV AMNSGTQAAREAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIANDVAKYFAIIPAMFLAFYPQLGVLNVMHLASP QSAILSAIIFNALIIIALIPLALKGVSYRPVGAAALLRRNLLVYGLGGILVPFIGIKVIDLAVSALHLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 5e-170 | 60 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 3e-170 | 60 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 3e-140 | 55 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 2e-139 | 55 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
