Name : RPA2643 (RPA2643) Accession : NP_947985.1 Strain : Rhodopseudomonas palustris CGA009 Genome accession: NC_005296 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 3007305 - 3008927 bp Length : 1623 bp Strand : - Note : observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished DNA sequence : ATGACCGCGCCCGCAGTTCTCACGCTCGACAAACTCAGCGTCCGACTGCCCGCCGGCGCCGACCGCAGCCATGCCGTGCG CGACGCATCGCTGATGATCGCCGCCGGCGAAATCCTTTGCGTGGTCGGCGAATCCGGCTCCGGCAAATCGATCATGGCGA ACGCCGTGATGCAGCTCCTACCCGGCGGCGTCACGCTCGACGGCGGCCGAGTGCTGTTCGAGGGCCGTGACCTTGCGCAG GCCAGCGCCGCGGAGATGCGCAAGGTTCGCGGCGCAGGCATCGCCATGGTGTTTCAGGAGCCGATGACCGCGCTTAATCC GCTGCGCACCATCGGTGATCAGATCGGCGAGATGTTCTCGATCCACACCGATCTGTCGAAGCGAGACATCAGGTCCAAGG TGCTTGCGCTGCTGACCGACGTGCGCATTCCCGATCCGGCGCGTGCCGCCGGCGCGTATCCGCACGAACTCTCCGGTGGC CAGCGCCAGCGCGCCATGATCGCGATGGCGCTCGCGCTCGATCCTAAGTTGCTGATCGCCGACGAGCCAACGACTGCGCT CGACGTCACCACACAAGCGCAGATCCTCACTCTGATCCGCGAACTACAAAGCCGGCGCAACACTGCGGTGCTTTTCATCA CCCATGATTTCGGCGTCGTCGCCGAGATCGCCGATCGCGTCGTGGTGATGCAGCACGGCGTCATCGTCGAGCAGGGCCAG GCCGATGACGTGCTGAACCGGCCGCAGCACGCTTATACGCGGCAACTGATCGCGGCGGTGCCGCCGCTGACCGCCCCGCC GCCGCGTCCATTTGGCAGCGACACGATCCTGAGCATCGACAACGTGTCGAAGACGTTCCGCACCGGTGGCTTTCTCGGCC GCGGCGCGCGCGTCACCGACGCGGTGAAGAACGTCTCGCTGAAATTGCCGAAGGGAGCGACGCTCGGCATCGTTGGCGAG AGCGGCTCCGGCAAGTCGACGCTGGCGCGCTGCATCATCCGCCTGCTCGATCCGGACGCGGGCTCGATCCTGCTCGACGG CCGTGACTGGGCGACGATGCCGCGCGAGCAGGTGCGGCGCGAAACGCGCCACATGCAGATGGTGTTTCAGGACCCGTTCG CTTCGCTCAATCCGCGGCACAAGGCCGAGGAATTGGTCGCGCAAGGCCCGATCATCCACGGCACGCCGCGCAAGCAGGCA ATCGCCGAGGCGCGCAAACTGTTCGAGTTGGTCGGGCTGGATCCCGCCGCCGGCGACCGGCTGCCGCACGAATTCTCCGG CGGTCAGCGCCAGCGGATCGGCCTCGCCCGCGCGCTGGCGCTGAAGCCCGACGTGCTGATCGCGGATGAAGCCGTATCGG CGCTCGACGTTTCGGTGCAGGCGCAGGTTCTCAAGCTGCTGACCGACTTGCGCGAGCAACTTGGGCTGTCGATTATCTTC ATCACCCACGACCTGCGCGTCGCCGCGCAGATCTGCGATCTCGTCGCCGTGATGAAGGACGGCGCAGTCGTCGAGCACGG CCCCGCCGGTGACGTCTTCAACGCCCCGCAGCACCCCTACACGCAAGCCCTGCTCGCCTCGATCCCGGGCGGAGATTTCG CGCGCTGCCACGCGCTGACCTAG Protein sequence : MTAPAVLTLDKLSVRLPAGADRSHAVRDASLMIAAGEILCVVGESGSGKSIMANAVMQLLPGGVTLDGGRVLFEGRDLAQ ASAAEMRKVRGAGIAMVFQEPMTALNPLRTIGDQIGEMFSIHTDLSKRDIRSKVLALLTDVRIPDPARAAGAYPHELSGG QRQRAMIAMALALDPKLLIADEPTTALDVTTQAQILTLIRELQSRRNTAVLFITHDFGVVAEIADRVVVMQHGVIVEQGQ ADDVLNRPQHAYTRQLIAAVPPLTAPPPRPFGSDTILSIDNVSKTFRTGGFLGRGARVTDAVKNVSLKLPKGATLGIVGE SGSGKSTLARCIIRLLDPDAGSILLDGRDWATMPREQVRRETRHMQMVFQDPFASLNPRHKAEELVAQGPIIHGTPRKQA IAEARKLFELVGLDPAAGDRLPHEFSGGQRQRIGLARALALKPDVLIADEAVSALDVSVQAQVLKLLTDLREQLGLSIIF ITHDLRVAAQICDLVAVMKDGAVVEHGPAGDVFNAPQHPYTQALLASIPGGDFARCHALT |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 44 |
cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 3e-79 | 44 |
oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 44 |
oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-79 | 44 |
dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 1e-95 | 42 |